Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium141g00017 ATGGATTTCAATAGTAATTCAGTTTCATCAAATGTTGTCTCAAATTCTATGTTAGTGCCCTCTTGTCCTATACTTCATTATCATCAAGAAAACGATAGAGAGCGGAGAAACACTTTCAATCTACCATTGGAATTCAACAGTAATTCAGCTTCAACAAATGTGTTGTCGAATTCCATCTCAATGCCCTCGTATCCAGTGCCTCAGTATCGTCCACAAAACATACAGGAGGGGAAACTCAGATCCTTCTGGGAGAAGCAGTTGATGGATATTCAAGCTGCTGAAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATAATGAAAACAGACGCAGATGTGCAGATGGTGAGTGCTGAAACTCCCATGCTGATGTCAAAAGCATGTGAGATTTTCATCCAGGAACTCACTTATCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAAAGTACTGTGCAGCCATGTGACGTTGCTAAGGTTATTATGCAGAATCATGCCATGCAATTCCTCACTGATATTGTCCCAGATAACCTCCAAAATTTCTGTGCTTATGGTGCTCAGGAAGAGCGTACTGCTGGAAACATTGCAGAAGGAAGGCATTCAAGCCAAGCTACCCTGCCTGACACAGCTGGTTTTATGGGAAATCCTATGAATGTGATGAATATGGGCAGAGGCTTGGAGGCAGGAAACCAGCTGATTCCTCAACCCAACAACATGATGCAGCCTCCCTTTGTTATGCCTTCAGATCAATTTCCTTACAATTTTCATCCCAAGTGA 786 0.4338 MDFNSNSVSSNVVSNSMLVPSCPILHYHQENDRERRNTFNLPLEFNSNSASTNVLSNSISMPSYPVPQYRPQNIQEGKLRSFWEKQLMDIQAAEAFKSQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTYRAWMRAEESNKSTVQPCDVAKVIMQNHAMQFLTDIVPDNLQNFCAYGAQEERTAGNIAEGRHSSQATLPDTAGFMGNPMNVMNMGRGLEAGNQLIPQPNNMMQPPFVMPSDQFPYNFHPK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium141g00017 261 Gene3D Histone, subunit A 66 179 IPR009072 GO:0046982
Vium141g00017 261 FunFam Nuclear transcription factor Y subunit C 67 179 - -
Vium141g00017 261 SUPERFAMILY Histone-fold 78 172 IPR009072 GO:0046982
Vium141g00017 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 73 182 - -
Vium141g00017 261 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 163 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium141g00017 Vium-Chr141 57487 60181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium141g00017 43 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 36.170 4.06e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium141g00017 CBFD_NFYB_HMF 2.9e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium141g00017 - K08066 gsj:114370134 174.866