Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium141g00016 ATGGATTTCAATAGTAATTCAGTTTCATCAAATGTTGTCTCAAATTCTATGTTAGTGCCCTCTTGTCCTATACTTCATTATCATCAAGAAAACGATAGAGAGCGGAGAAACACTTTCAATCTACCATTGGAATTCAACAGTAATTCAGCTTCAACAAATGTGTTGTCGAATTCCATCTCAATGCCCTCGTATCCAGTGCCTCAGTATCGTCCACAAAACATACAGGAGGGGAAACTCAGATCCTTCTGGGAGAAGCAGTTGATGGATATTCAAGCTGCTGAAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATAATGAAAACAGACGCAGATGTGCAGATGGTGAGTGCTGAAACTCCCATGCTGATGTCAAAAGCATGTGAGATTTTCATCCAGGAACTCACTTATCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAAAGTACTGTGCAGCCATGTGACGTTGCTAAGGTTATTATGCAGAATCATGCCATGCAATTCCTCACTGATATTGTCCCAGATAACCTCCAAAATTTCTGTGCTTATGGTGCTCAGCAGGAAGAGCGTACTGCTGGAAACATTGCAGAAGGAAGGCATTCAAGCCAAGCTACCCTGCCTGACACAGCTGGTTTTATGGGAAATCCTATGAATGTGATGAATATGGGCAGAGGCTTGGAGGCAGGAAACCAGCTGATTCCTCAACCCAACAACATGATGCAGCCTCCCTTTGTTATGCCTTCAGATCAATTTCCTTACAATTTTCATCCCAAGTGA 789 0.4347 MDFNSNSVSSNVVSNSMLVPSCPILHYHQENDRERRNTFNLPLEFNSNSASTNVLSNSISMPSYPVPQYRPQNIQEGKLRSFWEKQLMDIQAAEAFKSQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTYRAWMRAEESNKSTVQPCDVAKVIMQNHAMQFLTDIVPDNLQNFCAYGAQQEERTAGNIAEGRHSSQATLPDTAGFMGNPMNVMNMGRGLEAGNQLIPQPNNMMQPPFVMPSDQFPYNFHPK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium141g00016 262 FunFam Nuclear transcription factor Y subunit C 67 179 - -
Vium141g00016 262 SUPERFAMILY Histone-fold 78 172 IPR009072 GO:0046982
Vium141g00016 262 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 73 190 - -
Vium141g00016 262 Gene3D Histone, subunit A 66 179 IPR009072 GO:0046982
Vium141g00016 262 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 163 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium141g00016 Vium-Chr141 57487 60181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium141g00016 43 225 CCAAT-HAP5 Transcription Factor Family AT1G54830 36.898 1.52e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium141g00016 CBFD_NFYB_HMF 2.6e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium141g00016 - K08066 gsj:114370134 174.866