Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium141g00002 ATGGATGAAAGAAAAAGAAAAGTATCATTGCGAATATGGATATTGATTATTGCACCTACAACTGTTTTTATAACATTCATCTTTTTGTGCTACTATCTGATCAAGAGAAAACCAAAAAAGAGCAATAAGAGTCTGAAAAAGAGCAATAAGACTCTCCTAAGAGAAAATTTTGGTAAAGAAAGTCTCACTTTAGAGCCCCTACAATTCAAATTGGCTACACTTAAAGCAGCAACCAACAATTTTTCAGATGAAAATAGGATTGGCAAAGGAGGATTTGGAGAAGTTTATAAGGGAATTCTTTTTGATGGACAACGCGTAGCAGTAAAAAGGCTCTCAAAAAATTCTACCCAAGGTGCAAAGGAGTTTAAAAATGAAGTTTCAGTTATAGCTAAACTTCAACATAGAAATCTCGTGACATTTGTTGGTTTCTGTCTTGAAAAGCAAACTAAAATTCTTATATATGAATATGTACCGAACAAGAGTCTGGACTACTTTTTATTTGATTCTCAATTATCAAAATTATTAAGTTGGACTGAACGTTATAATATTATCAAAGGAATTGCTCAAGGAATCTTTTATTTACACGAACTTTCTCGGCTCAAAGTTATACATCGTGATCTCAAACCAAGTAATGTTTTGTTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTCTAGCTAGAATCGTTGAAATAAATCAAGATCAAGTCAATACAAATAAAATTGTTGGGACATTTGGATATATACCTCCAGAATATGCAATGTTTGGACAATTTTCAGAAAAGTTAGATGTTTTTAGTTTTGGAGTCATGGTTCTAGAAATTATTACTGGAAAAAAGAATTTGAGTTCTCACGAACCACATGTTCATGAAGGTCTCTTAAGTTATGTATGGAGACAATGGAGGGACCAAACATGGTTAGACATATTAGATCCAAATATCAAAGAAAATTATTCAGAATTTGAGGTTACTAAGTGTATTCAAATTGGTTTATTATGCGTTCAACAAAATCCTGATGTCAGACCTACAATGACAAATGTTCTATCATACATTAGTAGTTATTTCAATGAACTACCAAGTTCACAAGAACCAGCATTTTTCTTAAATGAAAGGACGAATCCAACAATATTTGCTCAGAAATCAAATATTAATGAACCTATCAACAACTGTATTTCATTCTCTACTAATAAAATGTCTGTTAGTGAATTTTTACCTCGATAG 1224 0.3137 MDERKRKVSLRIWILIIAPTTVFITFIFLCYYLIKRKPKKSNKSLKKSNKTLLRENFGKESLTLEPLQFKLATLKAATNNFSDENRIGKGGFGEVYKGILFDGQRVAVKRLSKNSTQGAKEFKNEVSVIAKLQHRNLVTFVGFCLEKQTKILIYEYVPNKSLDYFLFDSQLSKLLSWTERYNIIKGIAQGIFYLHELSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQVNTNKIVGTFGYIPPEYAMFGQFSEKLDVFSFGVMVLEIITGKKNLSSHEPHVHEGLLSYVWRQWRDQTWLDILDPNIKENYSEFEVTKCIQIGLLCVQQNPDVRPTMTNVLSYISSYFNELPSSQEPAFFLNERTNPTIFAQKSNINEPINNCISFSTNKMSVSEFLPR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium141g00002 407 Gene3D Phosphorylase Kinase; domain 1 39 156 - -
Vium141g00002 407 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 402 - -
Vium141g00002 407 ProSiteProfiles Protein kinase domain profile. 81 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium141g00002 407 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 40 156 - -
Vium141g00002 407 ProSitePatterns Protein kinases ATP-binding region signature. 87 109 IPR017441 GO:0005524
Vium141g00002 407 SUPERFAMILY Protein kinase-like (PK-like) 64 375 IPR011009 -
Vium141g00002 407 Gene3D Transferase(Phosphotransferase) domain 1 157 366 - -
Vium141g00002 407 CDD STKc_IRAK 87 352 - -
Vium141g00002 407 SMART serkin_6 81 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium141g00002 407 Pfam Protein kinase domain 82 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium141g00002 407 FunFam cysteine-rich receptor-like protein kinase 10 157 359 - -
Vium141g00002 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium141g00002 Vium-Chr141 6018 8669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium141g00002 60 407 Receptor kinase-like Gene Family AT4G11530 53.009 2.06e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium141g00002 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium141g00002 - - var:108321623 754.592