Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium141g00001 ATGGCTTCCCACAGTGTTCATCTCCCTCTTATCACTATACTTCATCACTCAATTATCTTCCTCCTACTTTTTAATTTACTTTCATGCTTAAGCTCCAATCATACTTACAGCAATTGCCCTAATCTGATAAGTTGTGGCCAAATAAGAAACATCGGTTTTCCATTCTGGGGAGGGAACCGCCCAAGAGAGTGTGGCCACCCTCTGATGGAACTCATCTGCGAAAACGAGATCAGCTACATAACCATTAAGGATGTCAAATACAAGGTTTCGGAAGCCAACCCAGATAGCCATACTTTGAAAATCACCAAACAAGATGACTTGATAGACTTATGCCAGCCAGAACAAGTCAGCACCAGCCTTGACACTCAGCTCTACGTTTACGAGTCACCCTATAACAATCTTACCCTTTCCTATGGTTGCACTTCTTCAGAGTTTTTGCCTACCAACTATATTCGCTGTAATCGAACTTCTGGGGAAACCGTTTATTCTCAGTTTGGGTCACTTTCTCCCTTGTCTTGCAAAACTAGTGTGGTTGTTCCGGTTCCTCTTTCATTGCAGCAGATTGATAGTTTCTTCCAAGTATACCTGGCAATCAAAGAAGGGTTTGTGGTGAGATGGATAATAGGTGTTGAAGAATGTGCCAAGTGCGAAAAATCAGGTGGAGAATGCGGTTTTGAAGGGTCTTCACAGCAAACATGTTACTGCAGAGATGGACCATGTCCTAACATCTCACAAGATAGCGAAGCATCTTCAGGAAAAAGAAAAGTATCATTGCGAATATGGATCTTGATTATCGTACCTACAACTGTTTTTATAACATTCATCTTTTTGTGCTACTATCTGATCAAGAGAAAACCAAAAAAAAGCAATAAGAGTCTGAAAAAGAGCAATAAGACTCTCCTAAGAGAAAATTTTGGTAATGAAAGTCTCACTTTAGAGCCCCTACAATTCAACTTGGCTACACTTAAAGCAGCAACCAACAATTTTTCAGATGAGAATAGGATTGGCAAAGGAGGATTCGGAGAAGTTTATAAGGGAATTCTTTTTGATGGACAACACGTAGCAGTAAAAAGGCTCTCAAAAAATTCTACCCAAGGTGCAAAGGAGTTTAAAAATGAAGTTTCAGTTATAGCTAAACTTCAACATAGAAACCTTGTGACATTGGTTGGTTTCTGTCTTGAAGAGCAAACTAAAATTCTTATATATGAATATGTGCCAAATAAGAGTCTTGACTATTTTTTATTTGATTCTCAACGATCAAAATTGTTAAGTTGGACAAAACGTTATGATATTATCAGAGGGATTGCTCGAGGGATTTTTTATTTACATGAACTTTCTCGACTCAAAGTTATACATCGTGATCTCAAACCAAGTAATGTTTTATTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTCTAGCTAGAATTGTTGAAATAAATCAAGACCAAGTCAGTACAGATAAAATTGTTGGAACATTTGGGTATATGTCTCCAGAATATGTAATGTTCGGAAAATTTTCAGAAAAGTCAGATATTTTTAGTTTTGGAGTCATGGTTCTAGAGATTGTTACTGGAGAAAAGAATTTGAGTTCTCACAAACCACTTGTATGGAGACAATGGAGGGACCAAACTTGGTTAGAAATATTAGATCCAAATATTAAAGAAAACTAT 1677 0.3703 MASHSVHLPLITILHHSIIFLLLFNLLSCLSSNHTYSNCPNLISCGQIRNIGFPFWGGNRPRECGHPLMELICENEISYITIKDVKYKVSEANPDSHTLKITKQDDLIDLCQPEQVSTSLDTQLYVYESPYNNLTLSYGCTSSEFLPTNYIRCNRTSGETVYSQFGSLSPLSCKTSVVVPVPLSLQQIDSFFQVYLAIKEGFVVRWIIGVEECAKCEKSGGECGFEGSSQQTCYCRDGPCPNISQDSEASSGKRKVSLRIWILIIVPTTVFITFIFLCYYLIKRKPKKSNKSLKKSNKTLLRENFGNESLTLEPLQFNLATLKAATNNFSDENRIGKGGFGEVYKGILFDGQHVAVKRLSKNSTQGAKEFKNEVSVIAKLQHRNLVTLVGFCLEEQTKILIYEYVPNKSLDYFLFDSQRSKLLSWTKRYDIIRGIARGIFYLHELSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQVSTDKIVGTFGYMSPEYVMFGKFSEKSDIFSFGVMVLEIVTGEKNLSSHKPLVWRQWRDQTWLEILDPNIKENY 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium141g00001 559 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 289 404 - -
Vium141g00001 559 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Vium141g00001 559 Gene3D Phosphorylase Kinase; domain 1 287 404 - -
Vium141g00001 559 SUPERFAMILY Protein kinase-like (PK-like) 309 545 IPR011009 -
Vium141g00001 559 FunFam Lectin-domain containing receptor kinase A4.3 405 559 - -
Vium141g00001 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vium141g00001 559 Pfam Protein kinase domain 330 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium141g00001 559 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 155 556 - -
Vium141g00001 559 ProSiteProfiles Protein kinase domain profile. 329 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium141g00001 559 Pfam Wall-associated receptor kinase C-terminal 169 238 IPR032872 -
Vium141g00001 559 CDD STKc_IRAK 335 559 - -
Vium141g00001 559 SMART serkin_6 329 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium141g00001 559 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Vium141g00001 559 Gene3D Transferase(Phosphotransferase) domain 1 405 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium141g00001 Vium-Chr141 7 3958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium141g00001 252 559 Receptor kinase-like Gene Family AT4G05200 51.258 6.25e-106 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium141g00001 Pkinase 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium141g00001 - - var:108321623 945.266