Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1419g00007 ATGGCAGAACCATCCACCGCCGCCGCCACCACCACCGCGGTGGACCCTCAGCCGCCAGTTACCAAAAGATGGGCTGACGAAGCGGACGAAGAAACCGAAGCCTCCTCCACCGCCACCGCCACTGAAGCATCTTCCGTCAACCTCGATTCATTAAAAATCGAAGACAACGATAAGAACCCTCCCAAACTCTTGGATGACCCCGACGATTCTAGCATCCAAAAGGTTACCTCTGGAGAAACGCCGTACACGTCGGCTGCGAAGTTCGAGGACTTAAACCTCTCGCCGGAGCTTCTGAAAGGGCTCTACGTGGAGATGAAGTTCAAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTCAACCCGCCGCACCGCGACCTCATCGCGCAGGCGCACAACGGGTCTGGGAAGACCACGTGCTTCGTGCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCGCCGCAGGCTCTCTGTGTCTGCCCTACTCGGGAGTTGGCTAATCAGAACATCGAGGTTCTCCGCAAGATGGGGAAGTACACCGGGATTGCGTCGGAATGCGCTGTGCCGACGGATAGCAATGCGCTCTCGATCGCGAAAAGGGCGCCGATTATGGCGCAGGTGGTGATCGGAACCCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCGCCAGGTTGAAGATTCTTGTTTTTGACGAGGCAGATCAAATGCTTGCGGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAAAGTCAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAAAGAGGATCATAATAAACTTTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTCTACTGTTCTGATGAACTTGCGAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATCATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCACTTGTTGACATGGGCTACGAGGTTACATCTATACAAGGTGCTCTTGGTCATGACGAGAGAGAGAAAATTGTTAAGGAGTTCAGAGATGGTTTGACTCCAGTTCTTATTTCAACTGATCTTCTAGCTCGTGGCTTTGATCAGCAAACAGTACTGGGTCTTACTTGGATTCCTAACAAACACACTGCCAGCTATACCCGTGAACCTGAGCCTGATTGTGAAGTGTATTTGCATAGGGTTGGCAGAGCTGGGCGCTTTGGGCGCAAAGGGGCTGTATTTAACCTGATTTGTGATCAAAAGGATGAAAGGCTCATGTCGAAGATTGAGAATCACTTCGGCACTCGTGTAGCTGAGGTGCGAGCACAAAGTGTTGAAGACTATAAACGTGCTCTCAAGGAAGCCGGTTTACTGCAATGA 1479 0.4855 MAEPSTAAATTTAVDPQPPVTKRWADEADEETEASSTATATEASSVNLDSLKIEDNDKNPPKLLDDPDDSSIQKVTSGETPYTSAAKFEDLNLSPELLKGLYVEMKFKKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNIEVLRKMGKYTGIASECAVPTDSNALSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGAARLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNSNCQVLLFSATFNDTVKNFVSRTVKEDHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDMGYEVTSIQGALGHDEREKIVKEFRDGLTPVLISTDLLARGFDQQTVLGLTWIPNKHTASYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDQKDERLMSKIENHFGTRVAEVRAQSVEDYKRALKEAGLLQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1419g00007 492 Gene3D - 64 302 IPR027417 -
Vium1419g00007 492 MobiDBLite consensus disorder prediction 1 17 - -
Vium1419g00007 492 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 461 - -
Vium1419g00007 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 459 IPR027417 -
Vium1419g00007 492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Vium1419g00007 492 MobiDBLite consensus disorder prediction 1 76 - -
Vium1419g00007 492 MobiDBLite consensus disorder prediction 34 50 - -
Vium1419g00007 492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 482 IPR001650 -
Vium1419g00007 492 SMART helicmild6 350 441 IPR001650 -
Vium1419g00007 492 Pfam Helicase conserved C-terminal domain 321 441 IPR001650 -
Vium1419g00007 492 Pfam DEAD/DEAH box helicase 112 283 IPR011545 GO:0003676|GO:0005524
Vium1419g00007 492 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 115 IPR014014 GO:0003724
Vium1419g00007 492 MobiDBLite consensus disorder prediction 51 69 - -
Vium1419g00007 492 Gene3D - 305 485 IPR027417 -
Vium1419g00007 492 CDD DEADc_DDX19_DDX25 93 296 - -
Vium1419g00007 492 CDD SF2_C_DEAD 308 450 - -
Vium1419g00007 492 SMART ultradead3 106 311 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1419g00007 Vium-Chr1419 70023 78543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1419g00007 79 473 Eukaryotic Initiation Factors Gene Family AT1G72730 34.483 3.98e-62 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1419g00007 K18655 - gmx:100784739 733.406