Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14196g00008 ATGGAACTATCAGATTTGCAAAACAACAAGCAAAACATCACCAACACAAACAACACCAACACAAAAACAAACACAGGACCACCACCAGGAGCAGCTGCAGCTGCTGCAGCTGCTGCTGGCGGTGGCGGCGGTGGTAGTGGTGGTGGTGTTAGTGGTGCTACTCATCCTCGTCCACACCCCCACCATCATCACCAACAATCCTCTTCTTCCCATGTTGTCAGGCCAAACCCTCCATCTCCTTTCATCTCTTCCTCCACCACTTCTTCTTCTTCTAATTCTTCCTCCTCTTCCTCTTCTGCGTCAGCTTCTTCCCACATCATCGATGCCTCCTTGGCCATCGCCACCAGATCTGATGATTCCGCCAACAAGACCCAACCGCTCTCCACCGCCGTCGCCGAGCCCTCCCCCGCCGCCAACCCTCCCAAGCGATCCACCAAGGACAGGCATACCAAGGTAGACGGCCGCGGCCGCAGAATTCGAATGCCCGCCACCTGCGCTGCTAGGGTTTTCCAATTGACTAGAGAATTGGGCCACAAGTCCGACGGAGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCATCATCGCCGCCACCGGGACCGGCACCATCCCCGCTAATTTCTCCACCCTCAACGTCTCCTTCCGCAGCAGCGGCTCCACGTTGTCCGCACCGCCGTCCAAGTCGGCCCCGCACACCTTTCACGGCGCGCTCGCACTCGCTCACCACCCTTACGATGAAGCCTTTCAGCACACCGCTTTACTTGGCTTCCACCCTCACGCTCACGCTCACCAGCAGCACCAACAGCACCAGCAGCACCAGCAGCAACTTCTTTCCGCCGATCAAATCGCGGAAGCGCTTCCCAGCGGCGGCGGTGACTCCGGCGATAGCTATCTCAGGAAACGCTACCGAGAAGATCTGTTCAAAGACGATAACATTAACTCCCAATCACAGAACGAGAGCGGTGACGGTTCTTCGCCTAAAACTCCGAACCTACAGCTACCGAAGCAGCAGCCCCAGCAGCAAAACGAAGCTGGTTCTGGGCTTCTCAGGCCCACGAATTTGCTACCCGCCACAGCGATGTGGGCCGTGGCACCCGCTCCAGCGAGTGGACCTCCGGGCAGCACAATTTGGATGCTTCCGGTAACCGCGGCTTCTTCCGGTTCTGCTGCAGCTGCCGCTTCAGCCTCTTCTTCTGGCGGTGGTGGATCCTCTGCGAGTTCGGAGAGTCAGATGTGGCCTTTTCCTCAGAGTGGTTTCATGCCAAGGTTCAATCTTCCGAGTGCGCTTGAATTCCAAGGCGCACGTGCGGGTTCTCTGCAATTAGGGTCAATGTTAATGCCGCAGCAACCGTCTCAACATCTGGGTCTCGCCATGTCCGACTCCAACTTCGGCATGTTAGCTGCCCTTAATGCTTACTCAAGACCTGGTTTCAATATTAATTCCGACAATCATCATCCTCATCACCATCACCATCATCACCATCATCATCCCTTGGAGCATCAGCATCAACATCAACATCAACCCAGTGAGAGTGGAGAAGATGCTCCTAACAGCTCCCAATGA 1569 0.5628 MELSDLQNNKQNITNTNNTNTKTNTGPPPGAAAAAAAAAGGGGGGSGGGVSGATHPRPHPHHHHQQSSSSHVVRPNPPSPFISSSTTSSSSNSSSSSSSASASSHIIDASLAIATRSDDSANKTQPLSTAVAEPSPAANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSFRSSGSTLSAPPSKSAPHTFHGALALAHHPYDEAFQHTALLGFHPHAHAHQQHQQHQQHQQQLLSADQIAEALPSGGGDSGDSYLRKRYREDLFKDDNINSQSQNESGDGSSPKTPNLQLPKQQPQQQNEAGSGLLRPTNLLPATAMWAVAPAPASGPPGSTIWMLPVTAASSGSAAAAASASSSGGGGSSASSESQMWPFPQSGFMPRFNLPSALEFQGARAGSLQLGSMLMPQQPSQHLGLAMSDSNFGMLAALNAYSRPGFNINSDNHHPHHHHHHHHHHPLEHQHQHQHQPSESGEDAPNSSQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14196g00008 522 MobiDBLite consensus disorder prediction 142 156 - -
Vium14196g00008 522 MobiDBLite consensus disorder prediction 308 352 - -
Vium14196g00008 522 MobiDBLite consensus disorder prediction 1 27 - -
Vium14196g00008 522 MobiDBLite consensus disorder prediction 313 350 - -
Vium14196g00008 522 ProSiteProfiles TCP domain profile. 145 199 IPR017887 -
Vium14196g00008 522 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 80 468 IPR005333 GO:0003700
Vium14196g00008 522 MobiDBLite consensus disorder prediction 69 102 - -
Vium14196g00008 522 MobiDBLite consensus disorder prediction 479 522 - -
Vium14196g00008 522 MobiDBLite consensus disorder prediction 117 156 - -
Vium14196g00008 522 MobiDBLite consensus disorder prediction 1 102 - -
Vium14196g00008 522 MobiDBLite consensus disorder prediction 394 415 - -
Vium14196g00008 522 MobiDBLite consensus disorder prediction 486 503 - -
Vium14196g00008 522 MobiDBLite consensus disorder prediction 117 132 - -
Vium14196g00008 522 Pfam TCP family transcription factor 144 280 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14196g00008 Vium-Chr14196 38763 41256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14196g00008 142 464 TCP Transcription Factor Family AT1G35560 47.706 2.11e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium14196g00008 TCP 3.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14196g00008 - - ccaj:109804339 557.37