Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14196g00005 ATGTCAAGCATCAATACCAGCGGTTTCACAAACCAAGTAGAAGAAAGCGACGAGGAAGAGGTTGAGTACAAGGAGTGCCGTCGCAACCATGCAGTGGCCATTGGAGGAGATTGCTATGACGGGTGCAATGAGTATATGAAACCAAACGCCGAGCGAAACTCTCAGGACAGTTTCCTCTGTGCATGTTGCGGTTGTCACCGCAACTTTCACCGCAAGCACAATCCCGTGCAGGAAAGTGAAACAGAGAATGATTATCTTCTTGATGTAGTTCCTTTTTCAGGGACGTTTCACCCAGCAAGGGCTACCGACAACAACAACAACCCAGAGCCACTGCAGCAAGTAAGGCCACTGAGGAGGAAGAGGACCATCTTCTCGGTGGAGCAGAAGAACCAAATGAGAAGGTTTGCTGATATTTTGGGCTGGAAACCTCACAAGGGTAACAGAGAGGAGATTCAACGTTTCTGCACTGACATGGGCATAAGCCGCAAGATCTTCGTGGTCTGGCTCAACAACAATCGTCACCGTGCAGCTCAAAACTCCTCCCAGACAAGTCTTCCATCAAGCACTTGA 570 0.4912 MSSINTSGFTNQVEESDEEEVEYKECRRNHAVAIGGDCYDGCNEYMKPNAERNSQDSFLCACCGCHRNFHRKHNPVQESETENDYLLDVVPFSGTFHPARATDNNNNPEPLQQVRPLRRKRTIFSVEQKNQMRRFADILGWKPHKGNREEIQRFCTDMGISRKIFVVWLNNNRHRAAQNSSQTSLPSST 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14196g00005 189 NCBIfam homeobox domain, ZF-HD class 118 173 IPR006455 -
Vium14196g00005 189 MobiDBLite consensus disorder prediction 1 20 - -
Vium14196g00005 189 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 175 - -
Vium14196g00005 189 Gene3D - 102 180 - -
Vium14196g00005 189 Pfam ZF-HD protein dimerisation region 21 73 IPR006456 -
Vium14196g00005 189 ProSiteProfiles 'Homeobox' domain profile. 115 179 IPR001356 GO:0003677
Vium14196g00005 189 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 73 IPR006456 -
Vium14196g00005 189 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 22 73 IPR006456 -
Vium14196g00005 189 SUPERFAMILY Homeodomain-like 109 176 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14196g00005 Vium-Chr14196 25915 26729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14196g00005 20 173 ZF-HD Transcription Factor Family AT4G24660 34.911 5.40e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium14196g00005 ZF-HD_dimer 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14196g00005 - - vra:106775003 339.347