Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14193g00001 ATGTTTTGTAATTGTTTTGGTGCTTTGAATTGTTTTGGAAGGAGGGATGATCCTGCGGACCAGCCACATGAACAAGCTGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACAAACGATTTTCACCCATCGCGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCCACAAGGGAGTTTTAAGGGATGGTACTCGGGTTGCTATCAAGTCTCTTTCTGTTGAGTCTAAACAAGGGGCTCATGAATTTATGACAGAAATTGATTTGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTATTGAGGGTAGTAATCGAATACTGGTTTATGAGTTTATGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAAGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACAGCTTCTGGTCTACGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCATAGGGATATCAAGGCCAGTAACATATTGTTGGATGGGAATTTTAATCCGAAAATTGGGGACTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGACGTTTACAGTTTTGGGATTCTCATGCTTGAAGTAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGATGAGGACTATTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAAGAAGAAAATAGGCTTCTAGACCTTGTTGATTCAGAACTAAGTGAGTATGATGAGAGTGAGGTGTATCGGTTCCTTGTGGTGGCTCTATTTTGCACCCAATCAGCTGCTCAGCATAGACCAAGCATGAAACAAGTATTGGAAATGCTTTCCAAAGAAGTTCATCTTAATGAGAAGGCTTTGACTGAGCCTGGAATATACAGATGGCACAGCACTGGAAAAAGGGGTGGTTCTTTGAATGAGACATCATCTCAGGCAATCAAGCCCAGAAAAACTGGAAATCCACATGAAGCAGCTTCAGCTCACTTCAGTGGTACAGATATTGTGACAGAGATGCTTCCAAGATGA 1140 0.4158 MFCNCFGALNCFGRRDDPADQPHEQAVATKKFSYNSLRSATNDFHPSRKIGGGGYGVVHKGVLRDGTRVAIKSLSVESKQGAHEFMTEIDLISNIRHPNLVELIGCCIEGSNRILVYEFMENNSLASSLLGSKSKYVALDWPKRAAICRGTASGLRFLHEEAQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEVISGKSSSIAAFDEDYLVLVEWAWKLKEENRLLDLVDSELSEYDESEVYRFLVVALFCTQSAAQHRPSMKQVLEMLSKEVHLNEKALTEPGIYRWHSTGKRGGSLNETSSQAIKPRKTGNPHEAASAHFSGTDIVTEMLPR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14193g00001 379 CDD STKc_IRAK 50 316 - -
Vium14193g00001 379 MobiDBLite consensus disorder prediction 339 354 - -
Vium14193g00001 379 MobiDBLite consensus disorder prediction 336 366 - -
Vium14193g00001 379 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 343 - -
Vium14193g00001 379 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Vium14193g00001 379 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14193g00001 379 SUPERFAMILY Protein kinase-like (PK-like) 25 314 IPR011009 -
Vium14193g00001 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Vium14193g00001 379 FunFam cold-responsive protein kinase 1 15 119 - -
Vium14193g00001 379 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Vium14193g00001 379 Gene3D Phosphorylase Kinase; domain 1 14 119 - -
Vium14193g00001 379 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
Vium14193g00001 379 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14193g00001 379 Pfam Protein tyrosine and serine/threonine kinase 47 314 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14193g00001 Vium-Chr14193 3550 9766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14193g00001 27 329 Receptor kinase-like Gene Family AT1G56120 52.805 7.83e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium14193g00001 PK_Tyr_Ser-Thr 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14193g00001 - - gmx:100816683 683.33