Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14181g00002 ATGGCGGAATCACTTCTTTTCAGCTTCGCGGAATCGCTCCTACGGAAGCTTGCCACTGCTGCCGTTCAAGAAGCTTCTTTGGGGTTTGGTGTGGATCGCCAGCTACAACAGATGAAAGCGACTACAGCACTTATCAAGGCTGTGCTGTTAGATGCCGAGCAGAAGAATCCGCATAGCAGTGCACTGAGCGAATGGCTGGTTCAAGTCAAGCGCGTGTTTTCTGAGGCTGAAGACATAGTCGATGATTTTGACTGCGAAGCGTTGCGGAAGCATGTTGCCAACACCTATGGTGGCTCCTCAAGGAAGGTACGCCGTTTCTTCTCAACAAGTAATCCTGTTGTTTATCGTCTTAGAATGGCACATCACATTCAAGACATCAACACCAGGTTGGCCAAACTTGCAGATCAAAGAAGCATGTTTGGCCTTCAAATCATTGACCATGATACACGTGTGGTGCAACTGAGGGAAATGACACATTCTCATGTGAACCCTTCCAATGTTACAGGAAGAGAACACGATAAAAAGGAAATAGTAAAACTTTTGGTACAAGATGATGATCGTGAAAGTCTTTCTATTATTCCCATTGTTGGAATGGGAGGTTTGGGAAAAACCACACTTGCTAAGTTGGTCTTCAATGACACCACCATTCATGCATGTTTTCAGTTGAGAATGTGGGTATGTGTCTCTAATGATTTTGAACTTAGGAATGTGCTCATTAAAATCCTCAGTTCAGCTCCAAATCCAGCTAGTGTAAACTTCAATAGCTTTGAGACGGAGCAACTTCAAAATCATTTGAGGAACAAACTTCAAGATCAAAAGTTCTTGCTCGTGTTGGATGACGTGTGGAACGAGGATCCTGCAAGATGGGATGAGTTGAAGGAAATAATGGATTTGAGTGTTAAAGGGAGTAAAATTTTAGTGACTACTCGTAGCCATGCAGTAGTTGCTGCGATGCACACTAAATCCTCAAATTCGTACCTTCTAGAATGTCTTTCCGAAGAGGATTCTCTTTCTCTATTTCTGAAATCTGCTTTTGAAGATGGAGATGAGAAAAAGCATCCACAGTTCTCGGAGATTGGAAAAGAAATCGTAAAAAAATGTGGAGGATTACCATTGGCAGTGAAAACGTTGGGGAGTTCACTGTTCTCGAAATTTGACAAAAAGGAGTGGGAGTCTATAAGAGATAATGAGATCTGGAATTCAAAACAAAACGAAAAAGGCATTTTTCCTGCTCTCAAACTAAGTTACGATCAACTCCCTTCATATTTAAAACCTTGTTTTGCTTCTTTCTCCCTTTACCAACAGGATAGCGTGTTTACTGCTGCTGAGGTTTGTATGTTATGGGGAGCACTCGGTTTTCTTCCACCACCAAAGCAAGGTGAATCAATGACTGATATTTCCACTCAATATTTGCACGAACTATGGACAAGATCGTTTCTTTTAGATTTTGTTGACCTTGGTGGTGATTGTTATTTTAAATTGCACGATTTGGTGTCTGATCTTGCAGTGTTTGTTGGGAAAGGTGAGTTTGAAAGAATAGATCACCGCAATCCAAAAATATCCGAGAATATCCAACATTTGGCATTTGAAGAAAATAATTTTTATGGTGAAACTCTTCTCCCCACTAGTCCCAGAACTGTCATTTTTCTTAATGGAGGGAGCGATAAAGATTTCTTGAAAACATTGTTGTCAAGGTGCAAAGGCTTGAGGTATTTAAACTTAAAAAATTGTGAATACGAGAGTCTACCTCGCTGCATCGGAAAGTTGAAGCATTTAAGATTCCTCAGTCTTGCGAAAAATGAAAAACTTAAGGAACTCCCTTATTCACTTTGCAAACTTCAAAATTTGCAGACTTTGTTTCTTAATGGATGCATAAAGCTACAAATGTTACCCAAAGGAATAGAAAATCTCATCAGTCTTCGTCACTTGGCTATAACCACCACACAAGCCGCTTTTCCCGAAGAAATGATTGCAAAATTGACTTCTTTAGAAAATTTATATATCAGTTATTGTGATAATCTGCGGTCATTATTTGAAGAAGTACAACTCTTCACACTTAAAACTTTCCATTTATGTAATTGTGGAAGTCTAAAGTCGGTGTCATTCCATGCCATCAGAAATTTAGAGGGTTTGGTCATAAAAAACTGCGACAATTTGGATTTGTCATTAGGTCTTGGCAGCCAAATCTCCAATTCAAGGTTAAAGTATGTTGTTCTTACTGATTTGCCACAACTACTCACTTTGCCTCAGTGGTTACAAGGATGTGCAAACACTTTACGTTCCTTACTGATTCAGCAGTGCATGAATCTTAAGGAGTTTCCCGAGTGGCTACCAACTCTAATTCATCTCAAAGTACTTGAAATTGGTCATTGTCCAAATTTGTTGTCATTCCCTTTGCACCACCTCACAAATCTTGAAGACTTACAAATCATTGGTTGTCCTGCATTATCCAGAAGATTCCACCCAATAATTGGATACGATTGGCACAGAATATCATACGTAAAAAAAGTTTATATTGGTAGATCCTTGTAG 2532 0.3961 MAESLLFSFAESLLRKLATAAVQEASLGFGVDRQLQQMKATTALIKAVLLDAEQKNPHSSALSEWLVQVKRVFSEAEDIVDDFDCEALRKHVANTYGGSSRKVRRFFSTSNPVVYRLRMAHHIQDINTRLAKLADQRSMFGLQIIDHDTRVVQLREMTHSHVNPSNVTGREHDKKEIVKLLVQDDDRESLSIIPIVGMGGLGKTTLAKLVFNDTTIHACFQLRMWVCVSNDFELRNVLIKILSSAPNPASVNFNSFETEQLQNHLRNKLQDQKFLLVLDDVWNEDPARWDELKEIMDLSVKGSKILVTTRSHAVVAAMHTKSSNSYLLECLSEEDSLSLFLKSAFEDGDEKKHPQFSEIGKEIVKKCGGLPLAVKTLGSSLFSKFDKKEWESIRDNEIWNSKQNEKGIFPALKLSYDQLPSYLKPCFASFSLYQQDSVFTAAEVCMLWGALGFLPPPKQGESMTDISTQYLHELWTRSFLLDFVDLGGDCYFKLHDLVSDLAVFVGKGEFERIDHRNPKISENIQHLAFEENNFYGETLLPTSPRTVIFLNGGSDKDFLKTLLSRCKGLRYLNLKNCEYESLPRCIGKLKHLRFLSLAKNEKLKELPYSLCKLQNLQTLFLNGCIKLQMLPKGIENLISLRHLAITTTQAAFPEEMIAKLTSLENLYISYCDNLRSLFEEVQLFTLKTFHLCNCGSLKSVSFHAIRNLEGLVIKNCDNLDLSLGLGSQISNSRLKYVVLTDLPQLLTLPQWLQGCANTLRSLLIQQCMNLKEFPEWLPTLIHLKVLEIGHCPNLLSFPLHHLTNLEDLQIIGCPALSRRFHPIIGYDWHRISYVKKVYIGRSL 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14181g00002 843 Gene3D - 330 420 IPR042197 -
Vium14181g00002 843 Gene3D - 10 124 - -
Vium14181g00002 843 PANTHER DISEASE RESISTANCE PROTEIN RP 56 813 IPR044974 GO:0006952
Vium14181g00002 843 Pfam NB-ARC domain 171 417 IPR002182 GO:0043531
Vium14181g00002 843 Gene3D Ribonuclease Inhibitor 518 833 IPR032675 -
Vium14181g00002 843 Pfam Rx N-terminal domain 10 99 IPR041118 -
Vium14181g00002 843 FunFam Probable disease resistance protein At1g61300 149 323 - -
Vium14181g00002 843 FunFam Probable disease resistance protein At5g66910 330 415 - -
Vium14181g00002 843 CDD RX-CC_like 8 135 IPR038005 -
Vium14181g00002 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 428 IPR027417 -
Vium14181g00002 843 Gene3D - 150 324 IPR027417 -
Vium14181g00002 843 PRINTS Disease resistance protein signature 268 282 - -
Vium14181g00002 843 PRINTS Disease resistance protein signature 658 674 - -
Vium14181g00002 843 PRINTS Disease resistance protein signature 192 207 - -
Vium14181g00002 843 PRINTS Disease resistance protein signature 367 381 - -
Vium14181g00002 843 SUPERFAMILY L domain-like 493 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14181g00002 Vium-Chr14181 3443 5974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14181g00002 193 455 WRKY Transcription Factor Family AT5G45050 26.087 2.33e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14181g00002 - - vra:106771654 1149.81