Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1417g00013 ATGGGTGGTAGCGTTATTCCACTCTTGGCCATGATTGTTGTACAATTGAGTTATGCAGGAATGAATATTTCCTCAAAGCTTGCAATACAATCTGGCATGCACCCTCTTGTCCTTGTTGCTTATCGTCAAATTTTTGCCACTTTCTCCTTAGCTCCTTTTGCTTATTGCTTTGAACGGAATACGGCTCCCCCAATGACAAAGCGAATTGCGTTCCAGATATTATTAGCTTCCTTAACAGGAATTACAGGAAATCAGATACTATATTTCTTGGGTCTTAAATATTCAACCCCTACAATTGCATGTGCACTAAACAACTTGCTCCCAGCATTCACTTTCGTTCTTGCAGTTCTCTTCGGACAAGAGTGTTTGAGGATCAAGACAAAGGCTGGGGTAGCGAAGGTGTTTGGGACAATCCTTAGTGTGGGTGGAGCAGTGGTTCTATCATTTTACCATGGAAAACTCCTTGGTCTAGGTGAATCAAAAATTCAATGGAAATATGCTGAGAAAATGGAAGGAGGAGCCTCCTCTCGCGGTGAAACAAACTTGCTTCTGGGTCCTGTTACTGTAATTTGTAGCGCTCTTCTTTGGGCAGTATGGTTCATAATTCAAGCAAACATAAGCAGGAGCTACCCAGTTCCTTTTACCAGCAGTTTCTACATGTGTTTGATGGCAAGCATTCAGTGTTTGGTCATTGCCTTGTCTGTCGAACACGAGGCCTCAGCTTGGTCACTGTACAGTACAATAAGACTTACCTCTGCACTTTATGCGGGAATTATTTCAACTGGGCTAACCTATTCGCTCCTCTCGTGGTCTATCGAGAAGAAAGGTCCTCTCTATGCGTCTGTGTTCTCCCCTTTGCAGCTTGTCATCATTGCTGTTGTTAGCTGGGCACTACTGCACGAAAAAATATACATTGGCACTGCGATAGGGTCTCTGGTGATAGTGTTTGGGCTGTATTTTGTGTTGTTGGGAAAAAACAAAGATGTGGATGAGAATGACGGTGTTGATGAGATAACGGAGGCAATGGAGGATGATGTGAAAGACCTGGAATTGGAACCCTATAATCCTTTCAACGGTAACGGAAAGCATCATGAAGAAGATGATAAAAGGAAAGGGAAGGTGACAGGCAGAGGATTCGACGCAGATTAG 1149 0.4343 MGGSVIPLLAMIVVQLSYAGMNISSKLAIQSGMHPLVLVAYRQIFATFSLAPFAYCFERNTAPPMTKRIAFQILLASLTGITGNQILYFLGLKYSTPTIACALNNLLPAFTFVLAVLFGQECLRIKTKAGVAKVFGTILSVGGAVVLSFYHGKLLGLGESKIQWKYAEKMEGGASSRGETNLLLGPVTVICSALLWAVWFIIQANISRSYPVPFTSSFYMCLMASIQCLVIALSVEHEASAWSLYSTIRLTSALYAGIISTGLTYSLLSWSIEKKGPLYASVFSPLQLVIIAVVSWALLHEKIYIGTAIGSLVIVFGLYFVLLGKNKDVDENDGVDEITEAMEDDVKDLELEPYNPFNGNGKHHEEDDKRKGKVTGRGFDAD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1417g00013 382 PANTHER WAT1-RELATED PROTEIN 7 329 IPR030184 GO:0016020|GO:0022857
Vium1417g00013 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 139 - -
Vium1417g00013 382 Pfam EamA-like transporter family 184 322 IPR000620 GO:0016020
Vium1417g00013 382 Pfam EamA-like transporter family 7 148 IPR000620 GO:0016020
Vium1417g00013 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 222 326 - -
Vium1417g00013 382 MobiDBLite consensus disorder prediction 359 382 - -
Vium1417g00013 382 MobiDBLite consensus disorder prediction 343 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1417g00013 Vium-Chr1417 36703 38776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1417g00013 5 326 Nodulin-like Gene Family AT1G09380 55.901 1.79e-131 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1417g00013 - - var:108325504 746.503