Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1417g00010 ATGGCCGGTGATGGGACCCATTCAGATTCAAAAGCTGCAACAATTGTCATTAAAGATCTCAAATTTACATACCCCGGCATCGACGGCCACGCGCCGCCGGGTTCCTCACCGCTTATTCAAAACTTCTCTCTCACTCTCGGTTCCGGCGACCGCTGCCTTCTCGTCGGTTCCAACGGCGCCGGGAAAACCACGATCCTGAAGATACTAGGAGGGAAGCACTTGGTGGAACCTGACATGGTTCGCGTGCTTGGAAGATCAGCTTTTCACGACACCACTTTGGTGTCTTCTGGTGATCTCTGTTATCTCGGTGGCGAGTGGAGGCGAGATGTTGCTTTTGCGGGTTTTGATGTGCCAATACAGATGGACGTTTCTGCTGAAAAAATGATATTTGGTGTGGCTGGGATTGATCCTCAAAGAAGTGCGGAGCTCATCAAGGTATTGGACATTGATCTTTCCTGGAGATTGCATAAAGTATCTGACGGTCAAAGAAGAAGAGTACAGATTTGTATGGGTCTTCTCAAACCGTTCAAGGTTCTTCTTCTTGATGAGATAACTGTTGACCTTGATGTTCTAGCAAGAGCTGACCTTCTTAGATTTCTAAGAAAGGAATGTGAAGAGAGGGGTGCCACCATTATCTATGCAACACATATATTTGACGGTCTTGAGGATTGGCCTACACATATTGTGTATGTAGCCCATGGAAAGCTGCAACTAGCAATGCCTATGGACAAAGTCAAAGAAATTAGCAAATTGTCACTAATGAGAACAGTAGAAAGTTGGCTGCGGAAGGAACGAGATGAAGATAGAAGGAAAAGAAAAGAAAGAAAAGCAGCTGGGCTTCCTGAATTTGGAAAGAAAATTGAGGGAAGCCGTGTAACAGGGGATCCTGCACGTGCTGCAATTCGAGCAACTAATAATGGGTGGGCAGCAGGACGATTAAATTCCACCGTTGCTGGTGAGGAAAACTTCATCCTCAGCTCTAATCGAGTACTGAGGCAGTAG 1002 0.4631 MAGDGTHSDSKAATIVIKDLKFTYPGIDGHAPPGSSPLIQNFSLTLGSGDRCLLVGSNGAGKTTILKILGGKHLVEPDMVRVLGRSAFHDTTLVSSGDLCYLGGEWRRDVAFAGFDVPIQMDVSAEKMIFGVAGIDPQRSAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEDWPTHIVYVAHGKLQLAMPMDKVKEISKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFGKKIEGSRVTGDPARAAIRATNNGWAAGRLNSTVAGEENFILSSNRVLRQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1417g00010 333 PANTHER SKFA PEPTIDE EXPORT ATP-BINDING PROTEIN SKFE 13 261 - -
Vium1417g00010 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 250 IPR027417 -
Vium1417g00010 333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 15 258 IPR003439 GO:0005524
Vium1417g00010 333 SMART AAA_5 48 235 IPR003593 GO:0016887
Vium1417g00010 333 Gene3D - 10 286 IPR027417 -
Vium1417g00010 333 Pfam ABC transporter 40 185 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1417g00010 Vium-Chr1417 28404 31022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1417g00010 17 212 Calmodulin-binding Proteins AT2G36910 22.066 2.45e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1417g00010 K12608 - gmx:100782386 596.66