Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1416g00011 ATGGATCCCTATCTTTATATCTGTCAAAGAATGGGGGTGAGGGCAGGGAAAGTACTCATTGAAATGGATTGTGTAGAAAAAGGGATTGTAGAGCTCATCCACCAGTATGGCATACAGAGGCTTGTAATGGGAGCAGCATCTGATAAGAACTATTCTAGGAGAATGATATCCCTCAAATCTAAGAAAGCTATATATGTATCTGAACAAGCTCCAGCTTCTTGTCATATGCAGTTTGTCTGCAACGGGTACCTCATACACACAAGGGATTGCAGATTGGATAGAGGGAATGTAGAGGTTGGATCTCCTGTGCTGCAAATAGCAAACTCTGAAGTTGGGCATTCACCAAACACGGGATCCCCATCCTCAGTGGAAGGGCAAAATCGTTGGAGAAAACCAATTAATACCGGACAAGAGTTATTTCGTAGAGTTAGGACTATCAATGGTGCACTTCGGAAGAGCATTGGATCTGTTTCTTCTTTAGAAGGGTACTTAACTCCTCAGAGAAAGTTCGGTAAAGAAGCAAGTTGTGATGAGTTTGATGAGCAGTCACGAGGGAGTCCTTCAGTATTCTCAATGTGCTTTGAGAGCTGTTTGGGTGAAGCACAATTGATCCCAGATTTGATTAACAATGGCAGTGAGAATGTATTAGGCTTGTCATTGAATGACTTTTCTCTGGATAACAAGGATCTTCATTCACCATCTCCAAGTGTATTGGATGAAGGAATGGATGATGCTCTCTATGGTCAACTTGAACAGGCAATGGCTGAGGCTTGGAATGCTAGGAAAGAAGCACATCAAGAAACTGTTAGGCGCGTGAAAGCAGAAAAAGAAGCCAAGGATGCTATACGCAAGGCTAAAGCCACTGAAAACCTGTATCAAGAAGAGCTAAAACTAAGAAAAGAACAAGAGGAAGAAGTACAGAAAGCAAATGAAGAACTTGATGATATGAAGAGCCAGATAAACAAAGTTAACGAGGAACTCCAACTTGCCTTAGATCAGAAATTATCTCTAGAGAATCAAATTGCATCTACTGAACTTATTGTGAAGGAGTTGGAGCAGAAGAATATATCTGCTGATGAGTTGTCTCAAAAGTACAGGGATGAACTAGATGAGTTGCAAATGCAACTTGATAATGCATTGGGAGAGGCTGAGGAGTTAAAGAGAAAACAAGGGGAATCCTCAAGCATGCACGGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCCCTTAAGATTGGACAGGGTGGATATGGAAGTATATTTAAAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGACAGTGCCCAAGGTCCAATGGAGTTTCAACAAGAGGTTGAAATATTGAGCAGGTTGAGGCACCCGAATCTTGTGACACTCATAGGATCCTGCCCAGAATCCTGGACTCTTGTGTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGTAAAGATAACACACCTCCATTATCATGGCAAACTCGAATTCGCATAGCTGCAGAACTCTGCTCGGCTCTCATCTTTCTTCAATCAAGTAAACCTCACAGCATAGCACATGGTGACTTAAAGCCAGGCAACATTCTCCTGGATGCAAACCTTGTAACCAAGCTCAGCGACTTTGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGCACTACAGAGTTTTGGAGGACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTTATTTCTGGTGAACTCACACCAAAGTCAGATGTTTACTCGTTTGGAGTCATTTTATTGAGATTGATCACTGGGAAACCTGCTCTGGGAATAACAAAGGAAGTGCAATATGCATTACATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCTGGAGACTGGCCAGTTATGCTAGCTGAAGAGCTGGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAATAGAAAGAACAGACCAGATCTTCATCCAGATGTTTGGAGAATACTGGAACCAATGAGGGCTTCTTGTGGGCCCACTCAACTGGGTTCTCAAGGAAAATGCCAACCTCCTCCATATTTTATCTGTCCAATCTCTCTGGAAGTGATGCAAGATCCACAAGTGGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGTGAATGGCTGAAAAGTGGTCGTCACACTTCACCAAGGACAAAATCTAAGTTAGCACATCACAACCTTATTCCCAACCACTCTCTTCGCCATGCAATCCAGGACTGGCTTCAAACTCACTGA 2319 0.4248 MDPYLYICQRMGVRAGKVLIEMDCVEKGIVELIHQYGIQRLVMGAASDKNYSRRMISLKSKKAIYVSEQAPASCHMQFVCNGYLIHTRDCRLDRGNVEVGSPVLQIANSEVGHSPNTGSPSSVEGQNRWRKPINTGQELFRRVRTINGALRKSIGSVSSLEGYLTPQRKFGKEASCDEFDEQSRGSPSVFSMCFESCLGEAQLIPDLINNGSENVLGLSLNDFSLDNKDLHSPSPSVLDEGMDDALYGQLEQAMAEAWNARKEAHQETVRRVKAEKEAKDAIRKAKATENLYQEELKLRKEQEEEVQKANEELDDMKSQINKVNEELQLALDQKLSLENQIASTELIVKELEQKNISADELSQKYRDELDELQMQLDNALGEAEELKRKQGESSSMHGLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFKGILRHTEVAIKMLSPDSAQGPMEFQQEVEILSRLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRIAAELCSALIFLQSSKPHSIAHGDLKPGNILLDANLVTKLSDFGICRILSCQEGSSSSTTEFWRTVPKGTFVYVDPEFLISGELTPKSDVYSFGVILLRLITGKPALGITKEVQYALHSRKLKSILDPLAGDWPVMLAEELVRLALRCCEMNRKNRPDLHPDVWRILEPMRASCGPTQLGSQGKCQPPPYFICPISLEVMQDPQVAADGFTYEAEAIREWLKSGRHTSPRTKSKLAHHNLIPNHSLRHAIQDWLQTH 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1416g00011 772 CDD RING-Ubox_WDSUB1-like 703 758 - -
Vium1416g00011 772 Gene3D Phosphorylase Kinase; domain 1 387 489 - -
Vium1416g00011 772 Coils Coil 255 389 - -
Vium1416g00011 772 SUPERFAMILY RING/U-box 699 772 - -
Vium1416g00011 772 SMART serkin_6 417 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1416g00011 772 ProSiteProfiles U-box domain profile. 701 772 IPR003613 GO:0004842|GO:0016567
Vium1416g00011 772 SUPERFAMILY Protein kinase-like (PK-like) 392 675 IPR011009 -
Vium1416g00011 772 Gene3D Transferase(Phosphotransferase) domain 1 490 691 - -
Vium1416g00011 772 ProSitePatterns Protein kinases ATP-binding region signature. 423 444 IPR017441 GO:0005524
Vium1416g00011 772 SMART Ubox_2 705 768 IPR003613 GO:0004842|GO:0016567
Vium1416g00011 772 ProSiteProfiles Protein kinase domain profile. 417 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1416g00011 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Vium1416g00011 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 772 IPR013083 -
Vium1416g00011 772 Pfam Protein kinase domain 421 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1416g00011 772 PANTHER OS02G0152300 PROTEIN 1 767 - -
Vium1416g00011 772 MobiDBLite consensus disorder prediction 109 128 - -
Vium1416g00011 772 FunFam receptor-like protein kinase FERONIA 381 489 - -
Vium1416g00011 772 Pfam U-box domain 703 772 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1416g00011 Vium-Chr1416 116841 122177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1416g00011 1 772 U-box Gene Family AT2G45910 51.871 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium1416g00011 Pkinase 7.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1416g00011 - - var:108321203 1507.27