Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1416g00009 ATGGCTGTGGTGAGTCCTATGCCTGCAACTGCACCACAGATCAACCGTACGAGCAAGCTTCGTGATGTTGGGGTTCCTGGAATCATGACTAGTAGGAGTGAAATTGTGAGTGAGCCCAGTCCAAGTATGGTTGATGATACACTCTATGTTGCTGTGGCAAAAGATGTGAAAGACAGCAAATTAAATCTCATATGGGCAATACAAAATTCTGGAGGAAGGAGAATCTGCATCCTTCATGTTCACGTGCCATCACCTACGATCCCTATGATGGGTGCTAAATTTCCTGCAAGTGCACTGAGAGAACAGGAAGTTCAAGATTATCATGAAAGGGAAAGGCAAAATATTCCGAAGACTATGGATCCCTATCTTTATATCTGTCAAAGAATGGGGGTGAGGGCAGGGAAAGTACTCATTGAAATGGATTGTGTAGAAAAAGGGATTGTAGAGCTCATCCACCAGTATGGCATACAGAGGCTTGTAATGGGAGCAGCATCTGATAAGAACTATTCTAGGAGAATGATATCCCTCAAATCTAAGAAAGCTATATATGTATCTGAACAAGCTCCAGCTTCTTGTCATATGCAGTTTGTCTGCAACGGGTACCTCATACACACAAGGGATTGCAGATTGGATAGAGGGAATGTAGAGGTTGGATCTCCTGTGCTGCAAATAGCAAACTCTGAAGTTGGGCATTCACCAAACACGGGATCCCCATCCTCAGTGGAAGGGCAAAATCGTTGGAGAAAACCAATTAATACCGGACAAGAGTTATTTCGTAGAGTTAGGACTATCAATGGTGCACTTCGGAAGAGCATTGGATCTGTTTCTTCTTTAGAAGGGTACTTAACTCCTCAGAGAAAGTTCGGTAAAGAAGCAAGTTGTGATGAGTTTGATGAGCAGTCACGAGGGAGTCCTTCAGTATTCTCAATGTGCTTTGAGAGCTGTTTGGGTGAAGCACAATTGATCCCAGATTTGATTAACAATGGCAGTGAGAATGTATTAGGCTTGTCATTGAATGACTTTTCTCTGGATAACAAGGATCTTCATTCACCATCTCCAAGTGTATTGGATGAAGGAATGGATGATGCTCTCTATGGTCAACTTGAACAGGCAATGGCTGAGGCTTGGAATGCTAGGAAAGAAGCACATCAAGAAACTGTTAGGCGCGTGAAAGCAGAAAAAGAAGCCAAGGATGCTATACGCAAGGCTAAAGCCACTGAAAACCTGTATCAAGAAGAGCTAAAACTAAGAAAAGAACAAGAGGAAGAAGTACAGAAAGCAAATGAAGAACTTGATGATATGAAGAGCCAGATAAACAAAGTTAACGAGGAACTCCAACTTGCCTTAGATCAGAAATTATCTCTAGAGAATCAAATTGCATCTACTGAACTTATTGTGAAGGAGTTGGAGCAGAAGAATATATCTGCTGATGAGTTGTCTCAAAAGTACAGGGATGAACTAGATGAGTTGCAAATGCAACTTGATAATGCATTGGGAGAGGCTGAGGAGTTAAAGAGAAAACAAGGGGAATCCTCAAGCATGCACGGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCCCTTAAGATTGGACAGGGTGGATATGGAAGTATATTTAAAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGACAGTGCCCAAGGTCCAATGGAGTTTCAACAAGAGGTTGAAATATTGAGCAGGTTGAGGCACCCGAATCTTGTGACACTCATAGGATCCTGCCCAGAATCCTGGACTCTTGTGTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGTAAAGATAACACACCTCCATTATCATGGCAAACTCGAATTCGCATAGCTGCAGAACTCTGCTCGGCTCTCATCTTTCTTCAATCAAGTAAACCTCACAGCATAGCACATGGTGACTTAAAGCCAGGCAACATTCTCCTGGATGCAAACCTTGTAACCAAGCTCAGCGACTTTGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGCACTACAGAGTTTTGGAGGACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTTATTTCTGGTGAACTCACACCAAAGTCAGATGTTTACTCGTTTGGAGTCATTTTATTGAGATTGATCACTGGGAAACCTGCTCTGGGAATAACAAAGGAAGTGCAATATGCATTACATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCTGGAGACTGGCCAGTTATGCTAGCTGAAGAGCTGGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAATAGAAAGAACAGACCAGATCTTCATCCAGATGTTTGGAGAATACTGGAACCAATGAGGGCTTCTTGTGGGCCCACTCAACTGGGTTCTCAAGGAAAATGCCAACCTCCTCCATATTTTATCTGTCCAATCTCTCTGGAAGTGATGCAAGATCCACAAGTGGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGTGAATGGCTGAAAAGTGGTCGTCACACTTCACCAAGGACAAAATCTAAGTTAGCACATCACAACCTTATTCCCAACCACTCTCTTCGCCATGCAATCCAGGACTGGCTTCAAACTCACTGA 2673 0.4272 MAVVSPMPATAPQINRTSKLRDVGVPGIMTSRSEIVSEPSPSMVDDTLYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPSPTIPMMGAKFPASALREQEVQDYHERERQNIPKTMDPYLYICQRMGVRAGKVLIEMDCVEKGIVELIHQYGIQRLVMGAASDKNYSRRMISLKSKKAIYVSEQAPASCHMQFVCNGYLIHTRDCRLDRGNVEVGSPVLQIANSEVGHSPNTGSPSSVEGQNRWRKPINTGQELFRRVRTINGALRKSIGSVSSLEGYLTPQRKFGKEASCDEFDEQSRGSPSVFSMCFESCLGEAQLIPDLINNGSENVLGLSLNDFSLDNKDLHSPSPSVLDEGMDDALYGQLEQAMAEAWNARKEAHQETVRRVKAEKEAKDAIRKAKATENLYQEELKLRKEQEEEVQKANEELDDMKSQINKVNEELQLALDQKLSLENQIASTELIVKELEQKNISADELSQKYRDELDELQMQLDNALGEAEELKRKQGESSSMHGLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFKGILRHTEVAIKMLSPDSAQGPMEFQQEVEILSRLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRIAAELCSALIFLQSSKPHSIAHGDLKPGNILLDANLVTKLSDFGICRILSCQEGSSSSTTEFWRTVPKGTFVYVDPEFLISGELTPKSDVYSFGVILLRLITGKPALGITKEVQYALHSRKLKSILDPLAGDWPVMLAEELVRLALRCCEMNRKNRPDLHPDVWRILEPMRASCGPTQLGSQGKCQPPPYFICPISLEVMQDPQVAADGFTYEAEAIREWLKSGRHTSPRTKSKLAHHNLIPNHSLRHAIQDWLQTH 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1416g00009 890 Coils Coil 373 507 - -
Vium1416g00009 890 ProSitePatterns Protein kinases ATP-binding region signature. 541 562 IPR017441 GO:0005524
Vium1416g00009 890 SMART Ubox_2 823 886 IPR003613 GO:0004842|GO:0016567
Vium1416g00009 890 Pfam U-box domain 821 890 IPR003613 GO:0004842|GO:0016567
Vium1416g00009 890 Gene3D Phosphorylase Kinase; domain 1 505 607 - -
Vium1416g00009 890 SMART serkin_6 535 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1416g00009 890 SUPERFAMILY RING/U-box 817 890 - -
Vium1416g00009 890 ProSiteProfiles U-box domain profile. 819 890 IPR003613 GO:0004842|GO:0016567
Vium1416g00009 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 818 890 IPR013083 -
Vium1416g00009 890 FunFam receptor-like protein kinase FERONIA 499 607 - -
Vium1416g00009 890 PANTHER OS02G0152300 PROTEIN 48 885 - -
Vium1416g00009 890 CDD STK_N 47 200 - -
Vium1416g00009 890 MobiDBLite consensus disorder prediction 227 246 - -
Vium1416g00009 890 SUPERFAMILY Protein kinase-like (PK-like) 510 793 IPR011009 -
Vium1416g00009 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Vium1416g00009 890 Gene3D Transferase(Phosphotransferase) domain 1 608 809 - -
Vium1416g00009 890 ProSiteProfiles Protein kinase domain profile. 535 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1416g00009 890 Pfam Protein kinase domain 539 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1416g00009 890 CDD RING-Ubox_WDSUB1-like 821 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1416g00009 Vium-Chr1416 116841 122177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1416g00009 1 890 U-box Gene Family AT2G45910 50.726 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium1416g00009 Pkinase 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1416g00009 - - var:108321203 1737.24