Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1416g00006 ATGGCAAAGAAGTCCCAAAGACGCCATGTGCGGTTTGAGAAAGATAAATCAGGCTGCATGTGGAGTTTTATTAGTATGTTTGATTTTCGACATGGTCATTCTACTAGGAAGATGATTGCAGACAAGAGGCGAAGCAGCAAACATGCTGTTGGGGCCATAAATTCTAAGACTAAGTTCGAGAATAGCAATTTGGATGAAGTTTATCAAACCAGTTCGGACAGTGGAGAGAGTAGAAGACCAACAATTGTGACTGCTGCTAATAAGCCTAGCGTGAAGAAACTCATTGAAGAAGAGATGTTCATTGACCGGAATAAAATGAAGGATACAGATAGTGCTCAAATAGAATCAAAGGAATCCAAATTAAGGCGTGATGTCCTCTTGAAGTTAGATTCCAAAAGGAAAAAGAAATTTTACAAGAAAAACTGTGATAAGGACATCAATGATTTAAATTTAGATACAACCTTGAAATCTGAAATCACACATGATAAGCACTCAAGGAAACAATCTAAAGATAATCTTGATCTGGATAAGATGATTGCAGAGTTTTGTCATCTAAAAGATGTTTGTTCAATGATGCATGGCAATGATATAGAAGTAGAAGTTGAAGCACAATCAAACCAGAAGCAAGCTATTTCTGAAAAGGCAAAAGAAGCAATTTGTGAATTTGTGAATCAGATGGTATTAAATGGCAAAGATCCGGCTGAAGCCAGAAAATTCCTTTGTTCCCATCAACTTGTGGAAGCTATTGAGCTTCTAAGTTCAGATAAGGAATTGTTTCTTTCACTTCTACAAAATCCGAATTCGCTGTTGTTGAAATGTGTTCAAGAGTTTAGGAATTCTCAGGGAACAAATGAAAAAGAATATGGTCCAGTACTTGGTTCCAACTTCTCCGAACAAGATCATGGCAACCTGAAACAAAATGGGGATCTAGTCAACCACAAGAAGCATAACTTTTTCAGAAAAAAGACGAAGTCTCATTCAAAAAGTTCAGCAAATGAGAACGGGAACAGTAATTTATCAAGTATTGTTATTTTGAAGCCTGGGCAGATGGGCTGGCAAAATTCTGAAACTGGAAAAAACCTTGCCTCTTATCAAGATTCTTATGATGTTGTCAAATACAATGGTCCTTCTGTGAGAGGTAGTTCACATTTTTCTCTCACAGAGATAAAAAAGAAATTAAAGCATGCTATGGGAAGGGAGAGACATGGAAACCCTGAAGGGATCTCAAAAAGACACCCTGCTGCCGAATGTCAAAATAGGAGGCCTAGCAGCAAAGTCATTGGTAAAGACAATGTTGGAATGAGATCTCCTAACAAAGATCACTTTTTCATTGAAAAAATTGGAAGACCTGCCACTGGTGTTATGAAAGGAGACAAGCCTAGTACAACTAAAGATTTTGAATTGACAATGGAACATGAAAATGGTAGTCATCCAAAACAAAGGGTTTCTAACTTATATATTGAGGCTAAGAAACATTTGTGTGAAATTGTTGGTAATGGAGATGAGAAAATAGACTTGTCAAGTAGGCAGATTTCTAGAACCCTTGGGAAAATACTATCTCTTCCTGAGTACAGCTTTTCTCCCTTTGGCAGTCCTAGAAGGGATTGGGAGCATCATTCAGTAACTGCACAGAAAATATTTTCCACTTCAGATAAGATTTGGGTGGGTAATAAGGATAATGTGTCTCCCAAACAAGAATCCTGTGTTGGTCATTTGGATCAGGAAATAGACAATTCAGAGGAGCAGTCAATAATTTGTGACGAAATCTCTAATAACAAAGTTCAAGAAATTAAGACAGACTCAAATGTTGCAAATGACCGCGGCCATGTTGATGAAACACAAAAACTTTGTCCTGATAGAGATCAGATAGTTACTGGAGGTGATGTAGAATCTGCACAAGAGGTGAATGTTTTGGAATCTTCCTCACAACCAGTTGACCTCAGTGTAGGAAAGGAATACCAAAACTATGGTCTCTCAGAAATTTCTGATTGTGCAAAATGCTCTCAATGTTCAAAGCAGGGTGTAGAAAAAGAACACAAACCAACATCTCCTCTATTATCTCCACCCCACTATTCCACCACCAAAGAAAGTGTTACAGATGCATCTGGGCGGCCAAGTCCCATATCTGTTCTTGACACACCGTTCTTTGAAGATGAAGTTCAGCCTGTTGAAGTATCAGTCCGACCACTGCAATTTGGAGAACAATACTCTTCACCTTTGGATGAAATCAATAGAGAAAACTATTGTCTTAAAGAAAATGAATGGATATATGATTACATCAAAGCAATTCTGCAAACCTCTGGATTGACTATAGATCAATTGTCAATGGAATGCCTTTCCTCAGACAAGATCCTAGATCCTTCCTTGTTTGGTGAGGTAGAGTTACCAAACCAGATTTGCCATGATCAGAAGCTCATTTATGACTGTGTCAATAATGTTCTCATGGAGGTTTGTCAGAATTACTTCAGGTTCTCACCTTGTGTGTCATTCATAAAACCTGGCATAAGGCCTTCTCCAAACATGATGAAGGTTATTCTCAAAGTATGGGAAGGAGTGTGTTGGCATTTCCTTCCCTTGCCCCCACCCCGTACCTTAGACAAAATTATTAAAAAGGACATGGATAAAAATGGAACATGGATGGACCTTAGACTTGAAGCTGAAACCATTGATTTTGAAATGGAAGAAGCCATTCTTGCAGAACTGATGGAAGATACAATACTAAGCTGTGTAAGCAAAAGCTCAGAAGGTGATTGTTCTCAGCTTGAATTTGAATATAAGGACAAAGAAAACACCAAAAATGTGTAA 2805 0.3807 MAKKSQRRHVRFEKDKSGCMWSFISMFDFRHGHSTRKMIADKRRSSKHAVGAINSKTKFENSNLDEVYQTSSDSGESRRPTIVTAANKPSVKKLIEEEMFIDRNKMKDTDSAQIESKESKLRRDVLLKLDSKRKKKFYKKNCDKDINDLNLDTTLKSEITHDKHSRKQSKDNLDLDKMIAEFCHLKDVCSMMHGNDIEVEVEAQSNQKQAISEKAKEAICEFVNQMVLNGKDPAEARKFLCSHQLVEAIELLSSDKELFLSLLQNPNSLLLKCVQEFRNSQGTNEKEYGPVLGSNFSEQDHGNLKQNGDLVNHKKHNFFRKKTKSHSKSSANENGNSNLSSIVILKPGQMGWQNSETGKNLASYQDSYDVVKYNGPSVRGSSHFSLTEIKKKLKHAMGRERHGNPEGISKRHPAAECQNRRPSSKVIGKDNVGMRSPNKDHFFIEKIGRPATGVMKGDKPSTTKDFELTMEHENGSHPKQRVSNLYIEAKKHLCEIVGNGDEKIDLSSRQISRTLGKILSLPEYSFSPFGSPRRDWEHHSVTAQKIFSTSDKIWVGNKDNVSPKQESCVGHLDQEIDNSEEQSIICDEISNNKVQEIKTDSNVANDRGHVDETQKLCPDRDQIVTGGDVESAQEVNVLESSSQPVDLSVGKEYQNYGLSEISDCAKCSQCSKQGVEKEHKPTSPLLSPPHYSTTKESVTDASGRPSPISVLDTPFFEDEVQPVEVSVRPLQFGEQYSSPLDEINRENYCLKENEWIYDYIKAILQTSGLTIDQLSMECLSSDKILDPSLFGEVELPNQICHDQKLIYDCVNNVLMEVCQNYFRFSPCVSFIKPGIRPSPNMMKVILKVWEGVCWHFLPLPPPRTLDKIIKKDMDKNGTWMDLRLEAETIDFEMEEAILAELMEDTILSCVSKSSEGDCSQLEFEYKDKENTKNV 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1416g00006 934 MobiDBLite consensus disorder prediction 399 418 - -
Vium1416g00006 934 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 1 909 - -
Vium1416g00006 934 Pfam Protein of unknown function (DUF3741) 224 268 IPR022212 -
Vium1416g00006 934 MobiDBLite consensus disorder prediction 686 706 - -
Vium1416g00006 934 Pfam Domain of unknown function (DUF4378) 758 904 IPR025486 -
Vium1416g00006 934 Coils Coil 201 221 - -
Vium1416g00006 934 MobiDBLite consensus disorder prediction 399 432 - -
Vium1416g00006 934 MobiDBLite consensus disorder prediction 677 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1416g00006 Vium-Chr1416 67739 73895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1416g00006 1 892 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 31.140 4.30e-99 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1416g00006 - - gmx:102667950 1372.07