LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium14164g00008	ATGGTTACAGGTGTTCTTGTTTCTACTTTCCTCGAGAAGACTATCGACACTTTGGCTTCTCGTCTTGTCCACATATTACGTCAAAGAAAGCATAAGAAGCAACTCAACAACTTGAAGATGAAGTTCCTTGCCATTGATGTTGTGGCTCTTGATGCAGAACAAAAGCAGTTCAAAGATCCACGCGTCAGAGATTGGCTTCTCAGGGCCAAAGATGTTGTGTTTGATGTAGAGGATCTCTTGGATGAGATAGATTATGAACTCTCCAAAAGTCAGGCGGAAGCTGAGTCTCAGAGTGCTACTAACAAGGTGTGGAATTCCCTCAATTCTTCTTTTGTCAGTTTCTTTGAAATAGAAATTGAATCCAGGATGGAACAAGTCATCGAGGACCTAGAAGATCTTGCAAACGAAAGCTATATTCTAGGTTTGGAAAAGGGTGGTGGTGTTGGGATTGGATCAGGATCGGGTAGTAAATTAACATATACGTCTTTGCCAAATGAAAGTGTTATTTATGGCAGAGACGACGACAAAGAATTTGTCTTTAACTGGCTCACATCGGACACTCCCAACAACCTATCTATACTTTCTATTGTGGGCATGGGTGGGATGGGTAAAACCTCTCTTGCCCAACATGTATTCAATGACCCAAGACTTGAAGGTAAATTTGATACTAATGTTTGGGTCAGTGTTCCACATGAATTTGATGTTCTCAAAGTATCAAGAGCAATTCTTGACACAATAACTGCTTCAACTGATCATAGTATACAGCAGGAAGTAATTCAGAGAAGATTGAAAGAAGAACTTATGGGGAAGAAATTTCTTCTCGTTTTGGATGATGTTTGGAACGAAAGACCATCTAAATGGGAAGATGTGCAGAAGCCCCTAGTTTTCGGAGGCCAAGGCAGTAGAATTCTTGTCACTACACGGAGTGAGAAGGTTGCTGTTACCATGCGATCAGAAAAGCACCTCTTGCAAGCATTAAAAGAAGATCATTGTTGGGACTTGTTCGCAAAGCATGCATTTGAAAATGCTGATCCACAACCAGACCCAGACTTCATAGAGATTGGTAAGAAGATAGTGCAAAAATGTAATGGGCTTCCTTTAGCCTTAAAAACTCTGGGAAGTCTATTACACAATAAATCATCCCTTTGGGAATGGGAAAGTGTTATGAAAAGTGAGATATGGCATTTTTCAGAAAATGAGAGTGATATACTCCCTGCTTTAAGACTGAGCTATTTCCATCTTCCTTCTCATCTGAAGAAATGCTTTGCTTTTTGTGCCTTATTTCCCAGAGGTTATCGGTTTGACAAGGAGTGTTTAATTCAATTGTGGATGGCTCAAAATTTTCTAGCAAACCCTCTACAGAAAAAGAGTCCTAAAGAAGTCGGTGAAGAATATTTCAATGATCTATTATCTTGGTCCTTCTTTCAACAAGCAAGCAACGAAGAGGAAAAGCGTTTTATCATGCATGACCTTCTAAATGATTTGGCAAAATACGTCTGTGAGGACATATGCATCAGGTTAGGAGTTGATGAACCAAAAGGTATACCCAAAACAACCCGTCATTGTTCATTTTCATCCTCTAAATTATGCTTTGATGGGTTTGGGAGTTCGATTGATACTCAAAAGTTGCATACATTTACGCCAACAGATCGGGGTTGGGTTTGGGTTTGCAAGATGTCGATAAATGACTTGTTCTCCAGATTTAAGTTGATACGTGTTTTGTCTCTGTGTCATTGTCGTAGCCTTGTGGAGGTGCCTAAATCTGTAGGAAATCTTAAGCATCTTCTTTCATTAGATCTATCCTATACTCAAATAGAAAAACTACCTGAATCAATAAGTTTACTTTTCAAATTGCAAATACTGAAGCTAAACAATTGTCGAAAATTAAAGGAGCTTCCCTCATGTTTACATCAACTCGACAGTTTGCGTTGTCTTGAATTAGTAGGTATTGGAGTGAAAAATGTGGTAGAACATTTGGGAAAGCTGAAGAATCCTCAAGTATCAATGAGTTCATTTCATGTTGATAAAAGTAAGAAAATCAATATTCAGCAATTAGGAAAACTCAATCTTCTTGGAAGTCTAACAATTGATGATCTGCAAAATATTGAGAATCCCTCTTATGCATTAGAAGTAGATTTGAAGAACAAAACACATCTTGTGGAGCTACGGTTAAAATGGAATTTCATTGGCAGCTCTTCTGTTGATTCAGAAAAAGCTGAGGATGTAATTGAGAATCTACGACCTTCAAAATACTTGAAGAAGTTGTCAGTAAGTAACTATATTGGTAAGCAATTTCCAAATTGGTTACTCCATAATTCATTACCGAATCTGGTGTCCTTAGTGTTGGAGGAATGTGAATCTTGCCAACGTTTACCTCCGCTTGGACTTTTGCCATTTCTCAAGTACCTGGAGATTTCAGGGTTGGATGAGATAGTGAGTATTGATGCTGATTTTAATGGGAACAACTCTTGTTCATTTAAATCCCTTCAAAAATTGTATTTCTCTAATATGAGGCAATGGGAAAAGTGGGACTGCCAAGCTGTGACAGGTGCTTTTCCACGTCTAGAATTTTTTTCCATAGGAAATTGTCCCAAGCTGAAAGGACACCTGCCAAAGTTTGTTGCTTTAAAATCCCTATATGTCTTTCTCTGCGAACAACTTGAAGCTTTGATGGTCAGTGCGCTAGAATTACTTCTACAATATTGTGGAAAGCTGCAGTTGGAGCGATCTACAATGAAAAAGCTCACAATGGATGGGCACGACAAGGCAGCATCATTGGTGGCAATGGTTGGACGTATGCTACTCGACAGTTCTCTTGAAAACCTTTCCATTTGTTCACTTCTNCATACAACCATAACTCGAGTTGCATGTTCCAGAGAACGAACGGCTAAGGTCGAGAAAACTTACCAGTTTCAGAACTCGAAAATGTTCGGTTCAAATTTAAGCTTGGGACGCCGGAAGTATTCCTACGGTGCCTGA	2979	0.3914	MVTGVLVSTFLEKTIDTLASRLVHILRQRKHKKQLNNLKMKFLAIDVVALDAEQKQFKDPRVRDWLLRAKDVVFDVEDLLDEIDYELSKSQAEAESQSATNKVWNSLNSSFVSFFEIEIESRMEQVIEDLEDLANESYILGLEKGGGVGIGSGSGSKLTYTSLPNESVIYGRDDDKEFVFNWLTSDTPNNLSILSIVGMGGMGKTSLAQHVFNDPRLEGKFDTNVWVSVPHEFDVLKVSRAILDTITASTDHSIQQEVIQRRLKEELMGKKFLLVLDDVWNERPSKWEDVQKPLVFGGQGSRILVTTRSEKVAVTMRSEKHLLQALKEDHCWDLFAKHAFENADPQPDPDFIEIGKKIVQKCNGLPLALKTLGSLLHNKSSLWEWESVMKSEIWHFSENESDILPALRLSYFHLPSHLKKCFAFCALFPRGYRFDKECLIQLWMAQNFLANPLQKKSPKEVGEEYFNDLLSWSFFQQASNEEEKRFIMHDLLNDLAKYVCEDICIRLGVDEPKGIPKTTRHCSFSSSKLCFDGFGSSIDTQKLHTFTPTDRGWVWVCKMSINDLFSRFKLIRVLSLCHCRSLVEVPKSVGNLKHLLSLDLSYTQIEKLPESISLLFKLQILKLNNCRKLKELPSCLHQLDSLRCLELVGIGVKNVVEHLGKLKNPQVSMSSFHVDKSKKINIQQLGKLNLLGSLTIDDLQNIENPSYALEVDLKNKTHLVELRLKWNFIGSSSVDSEKAEDVIENLRPSKYLKKLSVSNYIGKQFPNWLLHNSLPNLVSLVLEECESCQRLPPLGLLPFLKYLEISGLDEIVSIDADFNGNNSCSFKSLQKLYFSNMRQWEKWDCQAVTGAFPRLEFFSIGNCPKLKGHLPKFVALKSLYVFLCEQLEALMVSALELLLQYCGKLQLERSTMKKLTMDGHDKAASLVAMVGRMLLDSSLENLSICSLLHTTITRVACSRERTAKVEKTYQFQNSKMFGSNLSLGRRKYSYGA	992

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium14164g00008	992	Gene3D	-	154	325	IPR027417	-
	Vium14164g00008	992	PRINTS	Disease resistance protein signature	362	376	-	-
	Vium14164g00008	992	PRINTS	Disease resistance protein signature	193	208	-	-
	Vium14164g00008	992	PRINTS	Disease resistance protein signature	266	280	-	-
	Vium14164g00008	992	PRINTS	Disease resistance protein signature	613	629	-	-
	Vium14164g00008	992	PANTHER	DISEASE RESISTANCE PROTEIN RP	61	866	IPR044974	GO:0006952
	Vium14164g00008	992	SUPERFAMILY	L domain-like	488	886	-	-
	Vium14164g00008	992	FunFam	Probable disease resistance protein At5g66910	325	410	-	-
	Vium14164g00008	992	Gene3D	-	7	135	-	-
	Vium14164g00008	992	Pfam	NB-ARC domain	173	390	IPR002182	GO:0043531
	Vium14164g00008	992	Coils	Coil	116	136	-	-
	Vium14164g00008	992	ProSiteProfiles	Leucine-rich repeat profile.	594	615	IPR001611	GO:0005515
	Vium14164g00008	992	Gene3D	Ribonuclease Inhibitor	555	923	IPR032675	-
	Vium14164g00008	992	Pfam	Rx N-terminal domain	7	97	IPR041118	-
	Vium14164g00008	992	Gene3D	-	410	498	IPR036388	-
	Vium14164g00008	992	FunFam	Probable disease resistance protein At1g61300	156	321	-	-
	Vium14164g00008	992	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	158	425	IPR027417	-
	Vium14164g00008	992	Coils	Coil	992	992	-	-
	Vium14164g00008	992	Gene3D	-	326	409	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium14164g00008	Vium-Chr14164	108477	111455	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium14164g00008	183	882	WRKY Transcription Factor Family	AT5G45050	23.419	2.85e-11	65.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium14164g00008	-		-	vra:106771961	1738.39