Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14164g00007 ATGAAGTTCCTTGCCATTGATGTTGTGGCTCTTGATGCAGAACAAAAGCAGTTCAAAGATCCACGCGTCAGAGATTGGCTTCTCAGGGCCAAAGATGTTGTGTTTGATGTAGAGGATCTCTTGGATGAGATAGATTATGAACTCTCCAAAAGTCAGGCGGAAGCTGAGTCTCAGAGTGCTACTAACAAGGTGTGGAATTCCCTCAATTCTTCTTTTGTCAGTTTCTTTGAAATAGAAATTGAATCCAGGATGGAACAAGTCATCGAGGACCTAGAAGATCTTGCAAACGAAAGCTATATTCTAGGTTTGGAAAAGGGTGGTGGTGTTGGGATTGGATCAGGATCGGGTAGTAAATTAACATATACGTCTTTGCCAAATGAAAGTGTTATTTATGGCAGAGACGACGACAAAGAATTTGTCTTTAACTGGCTCACATCGGACACTCCCAACAACCTATCTATACTTTCTATTGTGGGCATGGGTGGGATGGGTAAAACCTCTCTTGCCCAACATGTATTCAATGACCCAAGACTTGAAGGTAAATTTGATACTAATGTTTGGGTCAGTGTTCCACATGAATTTGATGTTCTCAAAGTATCAAGAGCAATTCTTGACACAATAACTGCTTCAACTGATCATAGTATACAGCAGGAAGTAATTCAGAGAAGATTGAAAGAAGAACTTATGGGGAAGAAATTTCTTCTCGTTTTGGATGATGTTTGGAACGAAAGACCATCTAAATGGGAAGATGTGCAGAAGCCCCTAGTTTTCGGAGGCCAAGGCAGTAGAATTCTTGTCACTACACGGAGTGAGAAGGTTGCTGTTACCATGCGATCAGAAAAGCACCTCTTGCAAGCATTAAAAGAAGATCATTGTTGGGACTTGTTCGCAAAGCATGCATTTGAAAATGCTGATCCACAACCAGACCCAGACTTCATAGAGATTGGTAAGAAGATAGTGCAAAAATGTAATGGGCTTCCTTTAGCCTTAAAAACTCTGGGAAGTCTATTACACAATAAATCATCCCTTTGGGAATGGGAAAGTGTTATGAAAAGTGAGATATGGCATTTTTCAGAAAATGAGAGTGATATACTCCCTGCTTTAAGACTGAGCTATTTCCATCTTCCTTCTCATCTGAAGAAATGCTTTGCTTTTTGTGCCTTATTTCCCAGAGGTTATCGGTTTGACAAGGAGTGTTTAATTCAATTGTGGATGGCTCAAAATTTTCTAGCAAACCCTCTACAGAAAAAGAGTCCTAAAGAAGTCGGTGAAGAATATTTCAATGATCTATTATCTTGGTCCTTCTTTCAACAAGCAAGCAACGAAGAGGAAAAGCGTTTTATCATGCATGACCTTCTAAATGATTTGGCAAAATACGTCTGTGAGGACATATGCATCAGGTTAGGAGTTGATGAACCAAAAGGTATACCCAAAACAACCCGTCATTGTTCATTTTCATCCTCTAAATTATGCTTTGATGGGTTTGGGAGTTCGATTGATACTCAAAAGTTGCATACATTTACGCCAACAGATCGGGGTTGGGTTTGGGTTTGCAAGATGTCGATAAATGACTTGTTCTCCAGATTTAAGTTGATACGTGTTTTGTCTCTGTGTCATTGTCGTAGCCTTGTGGAGGTGCCTAAATCTGTAGGAAATCTTAAGCATCTTCTTTCATTAGATCTATCCTATACTCAAATAGAAAAACTACCTGAATCAATAAGTTTACTTTTCAAATTGCAAATACTGAAGCTAAACAATTGTCGAAAATTAAAGGAGCTTCCCTCATGTTTACATCAACTCGACAGTTTGCGTTGTCTTGAATTAGTAGGTATTGGAGTGAAAAATGTGGTAGAACATTTGGGAAAGCTGAAGAATCCTCAAGTATCAATGAGTTCATTTCATGTTGATAAAAGTAAGAAAATCAATATTCAGCAATTAGGAAAACTCAATCTTCTTGGAAGTCTAACAATTGATGATCTGCAAAATATTGAGAATCCCTCTTATGCATTAGAAGTAGATTTGAAGAACAAAACACATCTTGTGGAGCTACGGTTAAAATGGAATTTCATTGGCAGCTCTTCTGTTGATTCAGAAAAAGCTGAGGATGTAATTGAGAATCTACGACCTTCAAAATACTTGAAGAAGTTGTCAGTAAGTAACTATATTGGTAAGCAATTTCCAAATTGGTTACTCCATAATTCATTACCGAATCTGGTGTCCTTAGTGTTGGAGGAATGTGAATCTTGCCAACGTTTACCTCCGCTTGGACTTTTGCCATTTCTCAAGTACCTGGAGATTTCAGGGTTGGATGAGATAGTGAGTATTGATGCTGATTTTAATGGGAACAACTCTTGTTCATTTAAATCCCTTCAAAAATTGTATTTCTCTAATATGAGGCAATGGGAAAAGTGGGACTGCCAAGCTGTGACAGGTGCTTTTCCACGTCTAGAATTTTTTTCCATAGGAAATTGTCCCAAGCTGAAAGGACACCTGCCAAAGTTTGTTGCTTTAAAATCCCTATATGTCTTTCTCTGCGAACAACTTGAAGCTTTGATGGTCAGTGCGCTAGAATTACTTCTACAATATTGTGGAAAGCTGCAGTTGGAGCGATCTACAATGAAAAAGCTCACAATGGATGGGCACGACAAGGCAGCATCATTGGTGGCAATGGTTGGACGTATGCTACTCGACAGTTCTCTTGAAAACCTTTCCATTTGTTCACTTCTGGAGTCAATAAGTGATGATTGTGTCTCTCTAAGGATCTTTCCACTGGATTTTTTCCCAACACTCAGGACCCTTGAACTCAGTGGATTTCCTAATCTACACCTGATTTCACAGGATCAAGTTCACAATCATCTCCAGCATCTGACAATCAAAGACTGTCCAAGACTTGAGTCGTACGGAGATACAGTCCTTCCTTGGAAAGCTTAA 2931 0.3907 MKFLAIDVVALDAEQKQFKDPRVRDWLLRAKDVVFDVEDLLDEIDYELSKSQAEAESQSATNKVWNSLNSSFVSFFEIEIESRMEQVIEDLEDLANESYILGLEKGGGVGIGSGSGSKLTYTSLPNESVIYGRDDDKEFVFNWLTSDTPNNLSILSIVGMGGMGKTSLAQHVFNDPRLEGKFDTNVWVSVPHEFDVLKVSRAILDTITASTDHSIQQEVIQRRLKEELMGKKFLLVLDDVWNERPSKWEDVQKPLVFGGQGSRILVTTRSEKVAVTMRSEKHLLQALKEDHCWDLFAKHAFENADPQPDPDFIEIGKKIVQKCNGLPLALKTLGSLLHNKSSLWEWESVMKSEIWHFSENESDILPALRLSYFHLPSHLKKCFAFCALFPRGYRFDKECLIQLWMAQNFLANPLQKKSPKEVGEEYFNDLLSWSFFQQASNEEEKRFIMHDLLNDLAKYVCEDICIRLGVDEPKGIPKTTRHCSFSSSKLCFDGFGSSIDTQKLHTFTPTDRGWVWVCKMSINDLFSRFKLIRVLSLCHCRSLVEVPKSVGNLKHLLSLDLSYTQIEKLPESISLLFKLQILKLNNCRKLKELPSCLHQLDSLRCLELVGIGVKNVVEHLGKLKNPQVSMSSFHVDKSKKINIQQLGKLNLLGSLTIDDLQNIENPSYALEVDLKNKTHLVELRLKWNFIGSSSVDSEKAEDVIENLRPSKYLKKLSVSNYIGKQFPNWLLHNSLPNLVSLVLEECESCQRLPPLGLLPFLKYLEISGLDEIVSIDADFNGNNSCSFKSLQKLYFSNMRQWEKWDCQAVTGAFPRLEFFSIGNCPKLKGHLPKFVALKSLYVFLCEQLEALMVSALELLLQYCGKLQLERSTMKKLTMDGHDKAASLVAMVGRMLLDSSLENLSICSLLESISDDCVSLRIFPLDFFPTLRTLELSGFPNLHLISQDQVHNHLQHLTIKDCPRLESYGDTVLPWKA 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14164g00007 976 Coils Coil 77 97 - -
Vium14164g00007 976 ProSiteProfiles Leucine-rich repeat profile. 555 576 IPR001611 GO:0005515
Vium14164g00007 976 PRINTS Disease resistance protein signature 227 241 - -
Vium14164g00007 976 PRINTS Disease resistance protein signature 574 590 - -
Vium14164g00007 976 PRINTS Disease resistance protein signature 323 337 - -
Vium14164g00007 976 PRINTS Disease resistance protein signature 154 169 - -
Vium14164g00007 976 FunFam Probable disease resistance protein At5g66910 286 371 - -
Vium14164g00007 976 Gene3D - 371 459 IPR036388 -
Vium14164g00007 976 Pfam Rx N-terminal domain 4 58 IPR041118 -
Vium14164g00007 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 386 IPR027417 -
Vium14164g00007 976 PANTHER DISEASE RESISTANCE PROTEIN RP 24 940 IPR044974 GO:0006952
Vium14164g00007 976 Gene3D - 2 96 - -
Vium14164g00007 976 Gene3D Ribonuclease Inhibitor 516 887 IPR032675 -
Vium14164g00007 976 FunFam Probable disease resistance protein At1g61300 117 282 - -
Vium14164g00007 976 SUPERFAMILY L domain-like 449 967 - -
Vium14164g00007 976 Gene3D - 115 286 IPR027417 -
Vium14164g00007 976 Gene3D - 287 370 IPR042197 -
Vium14164g00007 976 Pfam NB-ARC domain 134 351 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14164g00007 Vium-Chr14164 104576 107815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14164g00007 144 843 WRKY Transcription Factor Family AT5G45050 23.066 2.29e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14164g00007 - - vra:106771961 1803.88