Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14151g00009 ATGGAGGGAGAGGCTTGTTCCGAGGGAGAGAATAATCGGAAAAGGGGTGGCACAGACGATGATAGCAATGAGAATAACAACAACAACGACAGCAATCACGGAATTAGTAGCAAAATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTATCCGTCGGAGACGATGAGGGGAGAACTTTCTGAGAAATTGGGTTTGTCGGATCGGCAGCTTCAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGACGTCCAAGAAAGTGCCACGGAAGGTGGTGGCAGAACCTTTGCCGGAATCACCTACAGATGACCCCATGCTTGGCCCCCCGGAGCTTGGTAATGAGTATGGATCCGGGTCCGGTTCAGGGTCCAGCCCTTATGCCCGAGTGGAGCCCCTGAACATTGTTCCCCGGGGTGTGCCTGGTTATTACGAGTCCCCACGGGCTATGATGGAGAGTAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGGGAGCCGTTGAGGGAAGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGAGCACCTTTAGCAGCTACCGAACAGCAGAAGCTACCTAGTTTCGCCTATGACAGTAAAATATATGAAAGACATGATAGTAGAGCCAATAAGGCTATGGCAAGGACATTTCGTGACTATCGATCTCTTCCAACCCAGGCTGGCACTAGGTCTGATACTTCTGGACCGTTCAGCAAATCTCATTTACATGATGCAATGGAAGGTCCTGCCAGAAATCTTCATTTGGCCCTTGGAAATGAAACTGTACCTAGAATTCGTCCTAGTCAAGGTCAATTCCGTGCTCGTCTTTTGTCGCAACAAGATAAGCAATTGATTCCATATCAGTCTCCTAAGCGGGATGATAATGCCGCCCCAACTAGGGAATTGGACCCAACCATACTTAATGTTGGAACGAGCTCTCACTTTGCTGATCACCAAATTGTTGTGCCAGAAAATCTCCATGCTCAACCTAGTGGTCAAGTTTTGCATAACAACAATGCAATACGGATTGAGAAGAAACGAAAGAGTGATGATGTTCGTGACGTAGAAGCGCATGAGATGAAAATCCGGAAAGAGATTGAGAAGCAAGATAACCTTAGACGAAAGAATGAAGAAAGGATGAGAAAAGAAATAGAGAAACAAGATCGTGAAAGAAAGAAGGAAGAAGAGAGGTTAATGCGTGAGAGACAACGAGAAGAGGAGAAAGCAAGACGGGAGCAAAAACGCGAAATTGAGCGAAGGGAAAAGTTTTTGCTGAAAGAAAATATAAGAGCAGAAAAAATGAAGATAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCTACTGCTCGTAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATTCACCTTGATTTTGATACTATGCAACATATTGAGTCATTTAGGGATTCATTGTGTGTTTTCCCACCAAAGAGTGTCAAGCTAAGAAAACCATTTGCAATCAAACCGTGGATCAACTCAGAGAAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGACTATTGGGTGAGATACATGTTGCTCTTCTTAAGGTGGTAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACCGGATTAGGATCGAATCAAAACGGTGCTGCTAACGCCGGAGGTGGTCATCCAGAGATTGTGGAAGGCGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTGAATCTATTGACATGGCCAGAAATTTTCCGACAGCTAGCTTTATCTGCCGGATATGGACCACAGTTAAAGAAAAGAAGTGCTACCTGTTCATATGCAAATAATAAAGACGAGGGAAGAAGTTGTGAAGATATCATTTCTAAACTTCGTAATGGTTCAGCGGCTGAAAATGCAGTTGCAAAAATGCATGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAATTTGCAGCATTTCATGTTCTATCCCTTGAGGGTGACAAGGGATTGACAGTACTGGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGATCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATACCAAGCTTTTTGAAAGAATAGCTCCGTCAACATATTGTGTACGTCAGGCATTTAGAAAGAACCCTGCTGATGCCGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAGGATACTGATGATGTTGAAAGAGAAGAGTCAGAGAGTGATGAAATTGACGAGGACCCTGAAGTTGATGATTTGGTAAATTCGTCAAGTGCAAACAAAACATCTGAACCGTGTGATGATTTCTCATCAAATGGAAAAAAAAATTTGGGCCATGATGTTGGACTTCAGGGTGAGTTTGATAAGGATCTGCCTCATGTTCCTGAGAGTTCTTCCAAGAAGGTTGATACTCCAATTGCTGTAACCGGGAGGAAACCTGGTGCTTGTGAAGTTTTGAACGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCTTGGAGAATCATGGGTTCAAGGGCTTGCAGAAGGAGAATATTCTGACCTCAGTGTAGAGGAGCGTCTAAGTGCCCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTGGATAAATTTCGATTAAAAGATGATATTTTCAGTAAATCTGATTTTCCATCTCTCAATGGGAATAAAGTTGAAATACAATATTCTTGTCCTGCCGCAGAGGGAAACCAAAGCCCTTCATTGCTTGGTATTAATATTGGCAACAATAGTAATATTGTGCCCTCTCCCAGCACTGCAGAAAATCAAAAAGCCACTCCAGGTGTACAGAGCCTGTCTGTTGAAAAACACTCTTCAGTTCAAGATCTTTGCACTGGCCCAGATAACCCTCAGATTCAGACATTTGCACAGTATTCAAAAAGGTCACGGTCTCAGTTGAAATCTTATATTTTCCACATAGCAGAGGAGATGTGTGCCTACAGATCCTTACCCCTTGGGCAAGATAGAAGACGTAACCGTTATTGGCAATTCGTTGCATCTGCTTCTTCCAATGATCCTGGCTCTGGCCGGATCTTTGTCGAATTTCTTGATGGCAATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGCGCTTCTGAATTCCCTTGATTCGCGTGGGGTCAGGGAATCTCATTTGCGACTAATGTTGCAAAAGGTTGAGGGTTCCTTTAAGGAAAATGTTCATAATAATACACAATGTTCTAAAGCTGGAAGCAGAGGCGAAACATGTGTTAAAAATGAAGCTGACGAAACAGATTCCAGTCCTGATCGTCATACTGGATCTGACAGCCCCAGTAGTACCCTTTGTGGCCTGAACTCTGACAGTTTGGAAACTTCCTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCCTTGAGAAGGTATCAAGATTTTCAAAAGTGGACATGGAAAGAATGCTATAATTCATCAATATTATGTGCCATGAAATACGGGAAGAAAAGATGCAAACCTCAGGTTGTCGTCTGTGATATCTGTCTCAATCCTTATTTCTATGAAGACTCCCATTGCAGTTGTTGCCACAGAACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACACGCATTTCAATGTGGAGACAAATTATCAAAAGAGATTTGTATTTTGGATTCGTCTCTTCCCTTACGGACAAGATTGCTTAAGGCCCTGCTAGCTTATATTGAGGTTTCCATTCCACCCGAAGCATTTCAATCAACTTGGATCGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGCAAAACATCTTCTGTAGAGGAACTGCTACAGATATTGGCCATACTCGAGAGAGCATTGAAGCGGGACTTTCTATCATCAACCTTCTCTACAACAGGGGAACAGTTGGGGTTGAACACTATGTCAGAGAGTGCTGCACAAACCTCTGCCGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACCACTTCAGCCGTGTCTCTCAGACTTTTTGAGTTTGATGACTCAATTGTCTACGTACTGCATGAAAAACCTGAACCTCGTGAGGAGAAAGAAGATAGGCAGTACATAAAGCTTCCTTCAAGACACAGTGCTTCCAAATCTATTAAAGTGTCTGAAACAGCCGACATGGGACGTGATGAATTCATGAAGGTTAAATCTAATACTGTGAAAATTGTGCAAAGCAACAATAAACGAGGACGAGGTAGTGCTCTCAAAGGACGGAGTAAAAGTATATCTAAAACCAAACAAAATAATGGCCGTCGGCACAGTGCAAAGGTTGCTGGGAATCTAAATCAAAGGGTAAAACAACAGGGAGGGGGATCACAAGGACAAGCTGGTGGACGTGGTCGTCGAACAGTCCGGAAAAGAAGAATGGAGAAAAAGGCTGTTGAAGATCTGTTGCTAGGCCATAGGGGTGCCTCTCGTAACAACAACATTGCTAGAGAATCATTAAGAAACTTGGATGAGGATTGGGATGATCAAAAAGGAAGTCCCATGACTCCTATCCATATGGGAACTGCTAACATTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGTCCAAGCAATGGAGTCTGATGACAATGTCCAAGCAGTGGAGTCTGATGACAATGACCAAGCAGTGGAATCTGATGACAATGGTCAAGCAATGGAATCTGATGACAATGGACAAGCAGTAGAATCTGATGACAATGGCCAAGCTGTGGAATATGATCAAGGAAAATGGGAAATAGGTTTTAATGGTAATCCCAGCCGATGGCAGGGGGATCTGGTTGGAACAAGTGATGAAGATGTTGAAGCTTCTGAAGATGACAATCACAATGACAATGGCATTGAAGAGAATGAAGAGGAGGATTCAGAGGGAGATGTTATGAGCGAGGGTTCAGATGGTACTGCAAACAGAATTGTAAATGAAGAAGAAAGCTCAGATTCAGATGTCTCTGAAGATTCATCTGATTAG 5409 0.4293 MEGEACSEGENNRKRGGTDDDSNENNNNNDSNHGISSKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKKDLTSKKVPRKVVAEPLPESPTDDPMLGPPELGNEYGSGSGSGSSPYARVEPLNIVPRGVPGYYESPRAMMESRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAATEQQKLPSFAYDSKIYERHDSRANKAMARTFRDYRSLPTQAGTRSDTSGPFSKSHLHDAMEGPARNLHLALGNETVPRIRPSQGQFRARLLSQQDKQLIPYQSPKRDDNAAPTRELDPTILNVGTSSHFADHQIVVPENLHAQPSGQVLHNNNAIRIEKKRKSDDVRDVEAHEMKIRKEIEKQDNLRRKNEERMRKEIEKQDRERKKEEERLMRERQREEEKARREQKREIERREKFLLKENIRAEKMKIREELRKEKEAERRKAALEKATARRIAKESMELIEDEQLEMMELAASSKGFSSIIHLDFDTMQHIESFRDSLCVFPPKSVKLRKPFAIKPWINSEKNVGNLLMVWRFLITFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVVIKDIEDVARTPSTGLGSNQNGAANAGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSATCSYANNKDEGRSCEDIISKLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRQAFRKNPADAESILSEARKKIQIFENGFLAEEDTDDVEREESESDEIDEDPEVDDLVNSSSANKTSEPCDDFSSNGKKNLGHDVGLQGEFDKDLPHVPESSSKKVDTPIAVTGRKPGACEVLNVGNLGEDNMEIDESKLGESWVQGLAEGEYSDLSVEERLSALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQLDKFRLKDDIFSKSDFPSLNGNKVEIQYSCPAAEGNQSPSLLGINIGNNSNIVPSPSTAENQKATPGVQSLSVEKHSSVQDLCTGPDNPQIQTFAQYSKRSRSQLKSYIFHIAEEMCAYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEFLDGNWRLIDTEEAFDALLNSLDSRGVRESHLRLMLQKVEGSFKENVHNNTQCSKAGSRGETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDSLETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSILCAMKYGKKRCKPQVVVCDICLNPYFYEDSHCSCCHRTFPSNNGFNFSKHAFQCGDKLSKEICILDSSLPLRTRLLKALLAYIEVSIPPEAFQSTWIEDIRRHWSVKLSKTSSVEELLQILAILERALKRDFLSSTFSTTGEQLGLNTMSESAAQTSADPESVAVLPWVPLTTSAVSLRLFEFDDSIVYVLHEKPEPREEKEDRQYIKLPSRHSASKSIKVSETADMGRDEFMKVKSNTVKIVQSNNKRGRGSALKGRSKSISKTKQNNGRRHSAKVAGNLNQRVKQQGGGSQGQAGGRGRRTVRKRRMEKKAVEDLLLGHRGASRNNNIARESLRNLDEDWDDQKGSPMTPIHMGTANISNSTEEAESDDNVQAMESDDNVQAVESDDNDQAVESDDNGQAMESDDNGQAVESDDNGQAVEYDQGKWEIGFNGNPSRWQGDLVGTSDEDVEASEDDNHNDNGIEENEEEDSEGDVMSEGSDGTANRIVNEEESSDSDVSEDSSD 1802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1630 1644 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1543 1802 - -
Vium14151g00009 1802 ProSiteProfiles DDT domain profile. 559 618 IPR018501 -
Vium14151g00009 1802 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 36 1801 IPR044977 GO:0006357
Vium14151g00009 1802 SMART testlast3 559 618 IPR018501 -
Vium14151g00009 1802 Coils Coil 455 486 - -
Vium14151g00009 1802 Gene3D - 33 107 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1649 1666 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1 58 - -
Vium14151g00009 1802 ProSiteProfiles HARE-type HTH domain profile. 741 810 IPR007759 GO:0006355
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 116 152 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 838 893 - -
Vium14151g00009 1802 SUPERFAMILY Homeodomain-like 34 104 IPR009057 -
Vium14151g00009 1802 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 949 990 IPR028942 -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 864 881 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 22 54 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1223 1238 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 838 863 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1239 1254 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 253 273 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1569 1591 - -
Vium14151g00009 1802 Coils Coil 384 449 - -
Vium14151g00009 1802 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1128 1200 IPR028941 -
Vium14151g00009 1802 SMART HOX_1 47 109 IPR001356 GO:0003677
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1693 1712 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1211 1254 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 253 267 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1 21 - -
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1745 1774 - -
Vium14151g00009 1802 Pfam HB1, ASXL, restriction endonuclease HTH domain 741 809 IPR007759 GO:0006355
Vium14151g00009 1802 Pfam Homeodomain 48 104 IPR001356 GO:0003677
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 401 442 - -
Vium14151g00009 1802 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Vium14151g00009 1802 Pfam DDT domain 561 615 IPR018501 -
Vium14151g00009 1802 CDD homeodomain 50 104 IPR001356 GO:0003677
Vium14151g00009 1802 MobiDBLite consensus disorder prediction 1543 1561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14151g00009 Vium-Chr14151 110721 120817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14151g00009 41 1732 Homeobox Transcription Factor Family AT1G28420 47.465 0.0 1295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium14151g00009 WSD 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14151g00009 - - gmx:100784945 2736.44