Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14151g00007 ATGGAGGGAGAGGCTTGTTCCGAGGGAGAGAATAATCGGAAAAGGGGTGGCACAGACGATGATAGCAATGAGAATAACAACAACAACGACAGCAATCACGGAATTAGTAGCAAAATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTATCCGTCGGAGACGATGAGGGGAGAACTTTCTGAGAAATTGGGTTTGTCGGATCGGCAGCTTCAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGACGTCCAAGAAAGTGCCACGGAAGGTGGTGGCAGAACCTTTGCCGGAATCACCTACAGATGACCCCATGCTTGGCCCCCCGGAGCTTGGTAATGAGTATGGATCCGGGTCCGGTTCAGGGTCCAGCCCTTATGCCCGAGTGGAGCCCCTGAACATTGTTCCCCGGGGTGTGCCTGGTTATTACGAGTCCCCACGGGCTATGATGGAGAGTAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGGGAGCCGTTGAGGGAAGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGAGCACCTTTAGGTATACAAAAAATCATAGAAACTTGTGATTCTATCTTGACCTGCTGA 687 0.5007 MEGEACSEGENNRKRGGTDDDSNENNNNNDSNHGISSKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKKDLTSKKVPRKVVAEPLPESPTDDPMLGPPELGNEYGSGSGSGSSPYARVEPLNIVPRGVPGYYESPRAMMESRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLGIQKIIETCDSILTC 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14151g00007 228 MobiDBLite consensus disorder prediction 1 21 - -
Vium14151g00007 228 MobiDBLite consensus disorder prediction 1 58 - -
Vium14151g00007 228 MobiDBLite consensus disorder prediction 116 152 - -
Vium14151g00007 228 SUPERFAMILY Homeodomain-like 33 104 IPR009057 -
Vium14151g00007 228 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Vium14151g00007 228 SMART HOX_1 47 109 IPR001356 GO:0003677
Vium14151g00007 228 Pfam Homeodomain 48 104 IPR001356 GO:0003677
Vium14151g00007 228 CDD homeodomain 50 104 IPR001356 GO:0003677
Vium14151g00007 228 MobiDBLite consensus disorder prediction 22 54 - -
Vium14151g00007 228 Gene3D - 33 107 - -
Vium14151g00007 228 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 35 213 IPR044977 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14151g00007 Vium-Chr14151 99350 101170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14151g00007 41 217 Homeobox Transcription Factor Family AT1G28420 55.729 1.27e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium14151g00007 Homeodomain 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14151g00007 - - vum:124822339 433.335