Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14151g00003 ATGACCCAACCACTCCCCATCGTCGTTTACGTTCTGTTATCGGTAGTAGCTTTCGTATCGTGTCTCAACCAAGAGGGGCTTTACCTTTACCAACTCAAGCTGTCTCTCGACGACCCTGATTCTACTCTCTCCTCCTCCTGGAACCCCAGGGACGCCACCCCTTGCAACTGGTATGGTGTAACCTGCGCCGGCGATGCCTCCAACACCACTGTTACAGAATTGGACCTTTCCGACACCAACATCGGAGGCCCATTCCCTGCCAACATCCTCTGTCGTCTCCCCAACCTCCTCTCCATTAACTTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCGACATCTCCCTCTGCCGCTCTCTCCGCCACCTCGACCTCTCCCAGAACCTCCTCACCGGTCCCCTCCCCGCCACGCTCCCGCTTCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAATAACTTCTCCGGCCCAATCCCCGACTCCTTCGGAACCTTCCAGAACCTCCAGGTGCTCTCCCTCGTCTCCAATCTTCTAGAAGGTACCATCCCCCCCTCGTTGGGCAACGTCTCCTCTTTGAAAATGCTCAACCTCTCTTACAACCCCTTCTTCCCGGGTCGGATCCCTCCGGAGCTCGGCAACCTCACCAACCTCGAGGTTCTCTGGCTCACCCAATGCAACCTTGTCGGCGTCATTCCGACCTCCCTCGGGAACCTCAACAAGCTCCAGGACCTCGACCTCGCGCTCAATGACCTCTACGGCTCCATCCCGAGTTCGCTCACTCAGTTAACCAGCCTCACGCAGATCGAGTTGTACAACAACTCGCTCTCCGGGGAGTTCCCTCGGGGAATGGGGAATCTCACCCGCTTGAGGCTCCTCGACGCCTCCATGAACCACTTAACGGGGAAGATTCCCGACGAGCTTTGTTCTTTGCCGTTGGAGAGTCTTAATTTGTATGAAAACCGTTTCGAGGGAGAGTTACCGGCCAGCATTGCGGATTCCGAGAATCTTTACGAGCTTCGACTCTTCGGTAACCGCCTCACCGGCAGGTTACCGGCGAATCTTGGCAAGAATTCGCCGCTCCGGTGGCTGGACGTTTCGAGCAACCAGTTCTGGGGGCCTATTCCGGCGACGCTCTGTGATAATGGTGTTCTTGAGGAGCTTCTGGTGATTTATAATCTTTTCTCTGGGGAGATTCCGGCGAGCTTAGGCACGTGCCAGAGCTTGACACGTGTGAGACTAGGATTTAACCGGTTGTCCGGCGAGGTTCCCGCCGGCATCTGGGGGCTTCCGCACGTGTATCTTCTCGAGCTTGTCGACAACTCGTTTTCGGGTTCCATTGCGAGGACCATTGCGGGTGCCGGGAACTTGTCGCTGTTGATTTTGTCGAAGAATAACTTCTCGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTGCAGTTTTCCGCCAGTGATAATAAGTTCACTGGCTCGCTTCCTGATAGCATTGTGAATCTTGGGCAGCTTGGGATTCTCGATTTTCATAATAACAGACTCTCTGGCGAGTTGCCGAAAGGGATTCGTTCGTGGAAGAAGCTCAACGATTTGAATTTGGCCAACAATGAGATTGGTGGTACGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAACTTTCTAGATATTTCTAGCAACCGCTTTTCCGGGAAAGTCCCCCACGGGTTGCAGAATCTCAAGCTGAATCAGCTTAACTTGTCTTATAATCGTCTGACGGGTGAACTTCCCCCTCTCTTGGCTAAGGATATGTATAGGTCTAGTTTCCTTGGTAATCCTGGCTTGTGTGGAGATTTGAAGGGCTTGTGTGATGGTAGGGGTGAGGCAAAGAATGTAGGTTATGTTTGGCTGCTTCGAGCGATTTTTGTTGTAGCCACTTTGGTTTTCCTTGTAGGCGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCAGGACGCCAAGAGGGCGATTGATAAGTCAAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAATTGTCTTGATGAGGATAATGTGATAGGAAGTGGTTCCTCGGGTAAGGTTTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTAGAGAGTGGGGATGTTGAAAAGGGTAGGGTTCAGGACAATGCTTTTGACGCGGAGGTTGAGACTTTGGGCAAGATCAGGCACAAGAATATAGTCAAGCTGTGGTGTTGCTGCACCACAAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCTAATGGAAGTCTTGGTGATTTACTGCATAGTAGTAAAGGAGGGTTGTTGGATTGGCCAACAAGGTATAAGATAGCTGTGGATGCGGCAGAAGGCCTGTCTTATCTGCATCATGACTGTGTTCCCCCAATTGTTCATAGAGATGTGAAATCAAACAACATTCTATTGGATGGGGACTTTGGTGCGAGGGTGGCTGATTTTGGAGTAGCTAAGGCGGTTGAAACCACAGCAAAAGGAACTAAATCCATGTCCGTCATAGCTGGCTCTTGTGGCTATATTGCACCAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGCGACATATACAGCTTTGGGGTTGTCATACTCGAGTTGGTTACTGGAAGACGCCCGGTGGACCCTGAATTTGGAGAGAAAGACGTAGTTAAGTGGGTGTGCACTACCTTGGACCAGAAAGGCGTGGACCATCTAATTGACTCAAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATTAACCGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTGGGCACAGAGAACCAAACCAAGCCTGCCAAAAAAGATGGGAAGCTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTGTTGCTTAA 3003 0.5048 MTQPLPIVVYVLLSVVAFVSCLNQEGLYLYQLKLSLDDPDSTLSSSWNPRDATPCNWYGVTCAGDASNTTVTELDLSDTNIGGPFPANILCRLPNLLSINFFNNSINQTLPLDISLCRSLRHLDLSQNLLTGPLPATLPLLPNLRYLDLTGNNFSGPIPDSFGTFQNLQVLSLVSNLLEGTIPPSLGNVSSLKMLNLSYNPFFPGRIPPELGNLTNLEVLWLTQCNLVGVIPTSLGNLNKLQDLDLALNDLYGSIPSSLTQLTSLTQIELYNNSLSGEFPRGMGNLTRLRLLDASMNHLTGKIPDELCSLPLESLNLYENRFEGELPASIADSENLYELRLFGNRLTGRLPANLGKNSPLRWLDVSSNQFWGPIPATLCDNGVLEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAGNLSLLILSKNNFSGTIPDEVGWLENLVQFSASDNKFTGSLPDSIVNLGQLGILDFHNNRLSGELPKGIRSWKKLNDLNLANNEIGGTIPDEIGGLSVLNFLDISSNRFSGKVPHGLQNLKLNQLNLSYNRLTGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRGEAKNVGYVWLLRAIFVVATLVFLVGVVWFYFRYKNFQDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKAVETTAKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDVVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGTENQTKPAKKDGKLSPYYYDDASDHGSVA 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14151g00003 1000 Gene3D Ribonuclease Inhibitor 20 203 IPR032675 -
Vium14151g00003 1000 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 234 969 - -
Vium14151g00003 1000 Gene3D Ribonuclease Inhibitor 204 312 IPR032675 -
Vium14151g00003 1000 Pfam Protein kinase domain 689 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14151g00003 1000 SUPERFAMILY Protein kinase-like (PK-like) 682 967 IPR011009 -
Vium14151g00003 1000 Gene3D Phosphorylase Kinase; domain 1 671 774 - -
Vium14151g00003 1000 ProSiteProfiles Protein kinase domain profile. 687 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14151g00003 1000 MobiDBLite consensus disorder prediction 975 989 - -
Vium14151g00003 1000 MobiDBLite consensus disorder prediction 971 1000 - -
Vium14151g00003 1000 SMART serkin_6 687 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14151g00003 1000 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Vium14151g00003 1000 SUPERFAMILY L domain-like 371 594 - -
Vium14151g00003 1000 Gene3D Ribonuclease Inhibitor 331 618 IPR032675 -
Vium14151g00003 1000 SUPERFAMILY RNI-like 74 435 - -
Vium14151g00003 1000 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Vium14151g00003 1000 Pfam Leucine Rich repeat 67 83 IPR001611 GO:0005515
Vium14151g00003 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 189 - -
Vium14151g00003 1000 FunFam Leucine-rich receptor-like protein kinase family protein 207 305 - -
Vium14151g00003 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 775 984 - -
Vium14151g00003 1000 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Vium14151g00003 1000 Pfam Leucine Rich Repeat 119 138 IPR001611 GO:0005515
Vium14151g00003 1000 SMART LRR_typ_2 165 189 IPR003591 -
Vium14151g00003 1000 SMART LRR_typ_2 286 310 IPR003591 -
Vium14151g00003 1000 SMART LRR_typ_2 93 117 IPR003591 -
Vium14151g00003 1000 SMART LRR_typ_2 214 237 IPR003591 -
Vium14151g00003 1000 SMART LRR_typ_2 501 525 IPR003591 -
Vium14151g00003 1000 SMART LRR_typ_2 238 262 IPR003591 -
Vium14151g00003 1000 SMART LRR_typ_2 141 164 IPR003591 -
Vium14151g00003 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Vium14151g00003 1000 FunFam Receptor-like protein kinase HSL1 671 774 - -
Vium14151g00003 1000 FunFam Receptor-like protein kinase HSL1 311 618 - -
Vium14151g00003 1000 Gene3D Transferase(Phosphotransferase) domain 1 775 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14151g00003 Vium-Chr14151 50106 54120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14151g00003 19 1000 Receptor kinase-like Gene Family AT1G28440 72.194 0.0 1448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium14151g00003 Pkinase 3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14151g00003 - - gmx:100819887 1775.37