Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14151g00002 ATGAACCATGGGTACATTGTTTATGATTTGGTTATGATCACTCTATCCTTGTGCCTCATAATTCTCGGTGTTGTCCTCTTTGTTGCATGCAAGAAGAAACCGGTTGAGAGTGAAGAAACTGTTGCTGTGAAGCACTGTGCTAGAGTGTACTCACTGATGGACATTGATGCTGTCACTGATAACTTCAACCACAGGAGAGTAGTGGGAAAGGGTCCTCTGGGAACCGTGTATGTTGGGGTGCAAGAGAATGGAGAGCTTGTGGCTGTGAAAAGGATCCATCCCGTGCTTGTGTTGAGCAACGCAGGGTTAGGATTCTCATCAGTGTTGAAATGGCTCTCTTCGGTGCAACATCCCAACATAGTTCCTATAATTGGATTCTCAGAAGCACCGGGTGAAAGAGTTATAGTGATGGAGTTTGGGCGCATGATGAGCTTGGAGTTCTGTTTGCAACAAAACGTTAATGGGGCATCACTTTTGGATTGGAACAAGAGGATCAGAATTGCAGCAGGAACAGCGAGAGGGCTTCAGTATTTGCATGAAGTGGCAACACCAAACATCGTACATGGGCGAGTCAAGTCTTCAAATGTTTTAATTGATGTCAACTTTTGTCCTAGGATTTGTGATTATGGTCTCAACTTTTTGGCAGCAGGAGAAAAGAGAGAGCTAGTAGGTTATGTGGATGATGAGTATTGGAATGAAAGAGGGGGTGGTGGAAGCAAGGAAAGTGATGTTTATGGTTTGGGAGTTGTATTGCTTGAGCTAATAAGTGGTAGAGGATGCAATGAAGGAATGATAGTAGAGTGGGGTTTGCCTTTGATAAAGGCATTGGGTTTTGGTGAAGTTTTGGATCCTAGGTTGGTAATTCCTTCTGACATGAAGAATGTAGTTAGATTAGCCAAAGTTGCTTCGGCTTGTGTTGGTAATTCAAGAAAGTGTAGACCTTCCATAGCACAAGTGGCTACTATTTTGAACAATTTGGAGATGGAAGTGTGCATTTCTGATCTGTAA 1008 0.4315 MNHGYIVYDLVMITLSLCLIILGVVLFVACKKKPVESEETVAVKHCARVYSLMDIDAVTDNFNHRRVVGKGPLGTVYVGVQENGELVAVKRIHPVLVLSNAGLGFSSVLKWLSSVQHPNIVPIIGFSEAPGERVIVMEFGRMMSLEFCLQQNVNGASLLDWNKRIRIAAGTARGLQYLHEVATPNIVHGRVKSSNVLIDVNFCPRICDYGLNFLAAGEKRELVGYVDDEYWNERGGGGSKESDVYGLGVVLLELISGRGCNEGMIVEWGLPLIKALGFGEVLDPRLVIPSDMKNVVRLAKVASACVGNSRKCRPSIAQVATILNNLEMEVCISDL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14151g00002 335 Pfam Protein kinase domain 63 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14151g00002 335 PANTHER OS01G0253100 PROTEIN 40 327 - -
Vium14151g00002 335 SUPERFAMILY Protein kinase-like (PK-like) 40 323 IPR011009 -
Vium14151g00002 335 FunFam serine/threonine-protein kinase-like protein ACR4 29 139 - -
Vium14151g00002 335 FunFam Receptor protein kinase CRINKLY4 141 330 - -
Vium14151g00002 335 PIRSF ILK 31 333 - -
Vium14151g00002 335 Gene3D Phosphorylase Kinase; domain 1 25 139 - -
Vium14151g00002 335 Gene3D Transferase(Phosphotransferase) domain 1 142 332 - -
Vium14151g00002 335 ProSiteProfiles Protein kinase domain profile. 62 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14151g00002 Vium-Chr14151 38048 39349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14151g00002 47 324 Receptor kinase-like Gene Family AT3G59420 38.699 6.45e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium14151g00002 Pkinase 5.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14151g00002 - - gmx:100809726 557.37