Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1413g00013 ATGCTAATTCGTAAACGGGCTGAGCAAAGTGAAGTAGCTGCTAACTATGTCAAAGTTGTTGATGAAGAAGAATGGCATAAAATAACCTTCCACAATGGTGTTGGTTTTGAAAATGGAAATGGCTTAGAGTCCAGTGAGCAAGGTTTTGCCATTGGAGGTCAAGAGCGGTTAAGTCGAATGCATGGTTACTTGTCAGAGTTGGCTGCTGCTGCTTTTGTTTGCAGAGGTGGTGTTCAAAGAGTTCACTTGCTGGATGGAACTATTAGTGGAGTTTTGTTGTTGGAATTGTTTAAAAGAGACGGGATGGGAACAATGGTGGCTAGTGATCTTTATGAAGGCACTCGGACAGCAGAGGTGAAAGATATTTCTGGAATAAAACAACTTATTCAGCCTTTGGAGGTATCTGGCATATTGGTTAAGCGGACTGATGATGAGCTCTTGCAAACATTGGATTCATTCGTTGTTGTGGAAAGAGAAGGTCACATAATTGCTTGTGCTGCCCTTTTTCCTCACTTTGAGGAGAAGTGCGGGGAAGTTGCTTGCATTGCAGTATCTCCTGATTGTCGTGGTCAAGGACAGGGTGACAAAATGCTTGATTATATGGAGAAGAAAGCATCGTATCTGGGACTGAATATGCTTTTCCTGCTAACTACACGCACAGCAGATTGGTTTGTGAGGCGTGGATTTTCAGAATGTTCTATTGATTATATTCCTGAAAAGAAAAGGAGAAAGATCAATCTTTCTCGCAATTCTAAGTATTATATGAAGAAGCTTCTACCAAATAAAAGTGGAATTACTGTTGGTGTAAAATCTGATTCAAGTTAG 825 0.4073 MLIRKRAEQSEVAANYVKVVDEEEWHKITFHNGVGFENGNGLESSEQGFAIGGQERLSRMHGYLSELAAAAFVCRGGVQRVHLLDGTISGVLLLELFKRDGMGTMVASDLYEGTRTAEVKDISGIKQLIQPLEVSGILVKRTDDELLQTLDSFVVVEREGHIIACAALFPHFEEKCGEVACIAVSPDCRGQGQGDKMLDYMEKKASYLGLNMLFLLTTRTADWFVRRGFSECSIDYIPEKKRRKINLSRNSKYYMKKLLPNKSGITVGVKSDSS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1413g00013 274 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 112 260 IPR000182 GO:0016747
Vium1413g00013 274 PANTHER AMINO-ACID ACETYLTRANSFERASE 1 266 IPR010167 GO:0004042|GO:0005737|GO:0006526
Vium1413g00013 274 Pfam Acetyltransferase (GNAT) family 150 217 IPR000182 GO:0016747
Vium1413g00013 274 NCBIfam amino-acid N-acetyltransferase 65 258 IPR010167 GO:0004042|GO:0005737|GO:0006526
Vium1413g00013 274 CDD NAT_SF 153 215 - -
Vium1413g00013 274 Gene3D - 111 258 - -
Vium1413g00013 274 SUPERFAMILY Carbamate kinase-like 60 108 IPR036393 -
Vium1413g00013 274 Gene3D - 30 109 IPR036393 -
Vium1413g00013 274 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 115 262 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1413g00013 Vium-Chr1413 37098 43422 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium1413g00013 Acetyltransf_1 4e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1413g00013 K14682 - gmx:100777694 496.508