Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1413g00011 ATGGGTGCTCCTAAGCAAAAGTGGACCGCAGAGGAAGAAGCGGCATTGAAAGCTGGAGTTGTCAAACATGGGGCTGGAAAATGGCGCACCATACTTACTGACCCAGAGTTCAGTTCCATTCTGCGCATGCGTTCTAATGTTGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCAAGGCAGAAGGCAAAGCTTGCTCTTAAAAAGAACCTACTACCATCCCCAAAAATTGACAATAATCACATGGCCTTGAGTACCGCAGTTCAACGTGACAGAGGAGCAGCAGATCCCAAACCTCTGGCAGTTTCTGGTGCAATATCTCCTAATTCAAAGGAAAAAGTATCAAGGCTACAGAACTTCCAGTTAAATATATCTGCCATTTACTCTTGA 405 0.4444 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLPSPKIDNNHMALSTAVQRDRGAADPKPLAVSGAISPNSKEKVSRLQNFQLNISAIYS 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1413g00011 134 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Vium1413g00011 134 MobiDBLite consensus disorder prediction 91 111 - -
Vium1413g00011 134 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vium1413g00011 134 Gene3D - 8 95 - -
Vium1413g00011 134 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vium1413g00011 134 FunFam Telomere repeat-binding factor 1 8 86 - -
Vium1413g00011 134 FunFam Telomere repeat-binding factor 1 2 58 - -
Vium1413g00011 134 CDD SANT_TRF 6 57 - -
Vium1413g00011 134 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vium1413g00011 134 PANTHER SINGLE MYB HISTONE 4 1 110 IPR044597 GO:0003691
Vium1413g00011 134 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1413g00011 Vium-Chr1413 32761 34320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1413g00011 1 90 Single Myb Histone (SMH) Gene Family AT5G67580 75.556 1.51e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1413g00011 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1413g00011 K09422 - vum:124826323 262.307