Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1413g00002 ATGGCCTTGAGTACCGCAGTTCAACGTGACAGAGGAGCAGCAGATCCCAAACCTCTGGCAGTTTCTGGTGCAATATCTCCTAATTCAAAGGAAAAAGTATCAAGGCTACAGAACTTCCAGTTGGATAATATTATATTAGAGTCTATTATCAAGTTGAAGGAGCCGAAGGGTTCTGACAGGGCAGCAATTGCTTCATATATTGAGGATCAATACTGTTCTACACCAACCCTCAGAAAGTTACTGTCAACAAAACTGAAGCACATGGTGGCAAGTGGAAAATTAATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACTATATCTGAGAAAAGAAGATGTTCTTCCTTGTTACTCCTGGAAGGAAGGCCCAAAGATTCTCCAAAAACTGAGAAGAATGGTGTCAACATTCTTTCAAAATCCGAAATTGATGCAGAGCTATCAAAAATGAAGGGTGTGACACCACAAGAAGCAGCAGCTGCTGCTGCAAAAGCAGTTGCTGAGGCGGAAGCTGCCATTGCCGAGGCTGAGGCAGCAGCTAGGGAGGCAGACACTGCAGAAGCCGAGGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATAAAGGCTCTAAAATGCAAGACGCTTCACATTTGA 639 0.4382 MALSTAVQRDRGAADPKPLAVSGAISPNSKEKVSRLQNFQLDNIILESIIKLKEPKGSDRAAIASYIEDQYCSTPTLRKLLSTKLKHMVASGKLMKVKHKYRIATNLTISEKRRCSSLLLLEGRPKDSPKTEKNGVNILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADTAEAEAEAARVFAKAAIKALKCKTLHI 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1413g00002 212 MobiDBLite consensus disorder prediction 1 26 - -
Vium1413g00002 212 PANTHER SINGLE MYB HISTONE 4 8 208 IPR044597 GO:0003691
Vium1413g00002 212 SMART h15plus2 35 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium1413g00002 212 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 29 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium1413g00002 212 Gene3D - 37 114 IPR036388 -
Vium1413g00002 212 SUPERFAMILY "Winged helix" DNA-binding domain 38 114 IPR036390 -
Vium1413g00002 212 Pfam linker histone H1 and H5 family 42 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium1413g00002 212 Coils Coil 160 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1413g00002 Vium-Chr1413 201 4351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1413g00002 41 208 Single Myb Histone (SMH) Gene Family AT5G67580 52.071 2.24e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1413g00002 K09422 - gmx:778165 301.597