Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14119g00001 ATGGATCCTGTAGCAGCACAAGGACGTCCTCTCCCTTTTCTCACTAGAGATCTTCACTTACACCCTCACCACCAATTTCAGCCCCACCACAACCACCAAAACACGGAGGACGAAGCTGCCAATGGCCGCGGCCAGAAGCGGGATCGCGACGAGAACGCAGGCGGTGGAGGTGGCTCCTCCACACCCCCTCACGCTGGCGGAGAAGGCCAGGACCCCGGGTCGGGAGATGGAGGTGGAAGTGAAATGGCGAGAAGGCCGAGAGGAAGACCAGCAGGTTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGGGACAGTGCCAACGCTCTCCGATCCCATGTTATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCGTCACCGCCTTCGCCAGGCGGCGACAGCGTGGTGTCTGTGTTCTCAGTGGCAGCGGCACCGTCACCAACGTGACCCTCCGGCAGCCAGCTTCCCCTGGTGCCGTTGTGACCCTTCACGGAAGGTTCGAGATTCTATCCCTTTCCGGTTCATTTCTGCCGCCGCCGGCTCCGCCTGCCGCGTCAGGACTAGCCATTTACCTTGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGCGTGGTGGGACCCCTTGTGGCTTCGGGTCCTGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTAGAGGAAGAGGAAACTCCGGTACCGGTTCCGGGAACCGGAGGATTAGGGTCGCCGGGAATTGCAGGGACACAGCAACAATCGCAATCACAGCAGCAGCAACAGCCGCAACAGCTTGTGGGAGATCCTAACAGTTCTTCTCTCTTCCATGGAGTTCCGCAGAATCTTCTGAATTCGGTTCAATTACCTGCTGAGGGTTATTGGGGTGGCACTGCTCGCCCCCCTTTTTAA 927 0.575 MDPVAAQGRPLPFLTRDLHLHPHHQFQPHHNHQNTEDEAANGRGQKRDRDENAGGGGGSSTPPHAGGEGQDPGSGDGGGSEMARRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVPVPGTGGLGSPGIAGTQQQSQSQQQQQPQQLVGDPNSSSLFHGVPQNLLNSVQLPAEGYWGGTARPPF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14119g00001 308 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 224 IPR005175 -
Vium14119g00001 308 MobiDBLite consensus disorder prediction 236 284 - -
Vium14119g00001 308 MobiDBLite consensus disorder prediction 16 102 - -
Vium14119g00001 308 MobiDBLite consensus disorder prediction 251 284 - -
Vium14119g00001 308 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 243 - -
Vium14119g00001 308 FunFam AT-hook motif nuclear-localized protein 111 238 - -
Vium14119g00001 308 PIRSF ESCAROLA 15 308 IPR014476 GO:0003680
Vium14119g00001 308 Gene3D - 111 240 - -
Vium14119g00001 308 CDD DUF296 112 179 IPR005175 -
Vium14119g00001 308 ProSiteProfiles PPC domain profile profile. 108 244 IPR005175 -
Vium14119g00001 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 288 IPR014476 GO:0003680
Vium14119g00001 308 MobiDBLite consensus disorder prediction 16 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14119g00001 Vium-Chr14119 14511 16126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14119g00001 44 308 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 67.626 4.15e-89 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14119g00001 - - gmx:100816243 456.832