Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14112g00001 ATGCATGGCGTCAATGGCGGGGCAAAAGGCTTATCACAGTATTATAAGAATGAGCAGATAGGTAGCATGGTATTGAGTGAACATAATTTAGTGAAACTTGAGTTTCTCATAAATATACCTTCTATTTATTACCTCTATTTCCAAACCATGCAGCTTTTGGTTTCCAATTTCCATCTTCTTATCTATGTTTTTGTTTTTATGGGCTCTGTTTTTGAGTTGGGATGCGCGTCTACACCTTCGCAGCTTCAGTTGGAAGCAAGCGCTGTAATCAATAGCGGATGGTGGAATCTGTCGCATTCACAGTCACTTCATATATGTTCAAAGATTGATGGTATACATTGCAATGATGCTGGAAGTGTAACTCGTATAACATATAAGTATTCCAAACAACCGATTGAATTAGCAACACTAAACCTCCCTGCTTTCAAGAATTTGGAACATCTTGAGCTCTCCTATATTCTAAAAGGTACTATTCCATCTGAAATTGGAAATATGTCAAATCTCCGTCATCTAGATTTCTCTTACAATTTTCTTCAAGGTGAAATACCTCTTACAATAGGAAATCTTTCAAAACTCACTTTTCTTAATTTATCCTTCAATTATCTTCAAAGTCAAATACCTCCATCGGTAAAAAATCTTCTAAAACTTACTTATTTTGATTTAGCCTTCAATTCACTTCAAGGGGAAATACCTCTATCAATAAAAAATCTTTCAAACCTCACTTATCTTAATTTAATGGGGAATTCTCTTGAAGGTGAAATACTTCCATCAATAGGACATCTTTCAAAACTCAATTATCTTAATTTAGCCCGGAATTCTCTTCAAGGTCAAACACCTCTTACAATAAGAAATCTTTCAAAACTCACTTATCTTGATTTATCCCACAATTCTCTTCAAGGTCAAATACCTTTATCACTAGGAAATCTTTCAAAACTCACTTATCTTTATTTATCCCACAATTATCTTCAAGATAAAATACCTCCAACAATAGGAAATATTTCCCAACTCACTTACATTGATTTATCTTACAATTATCTTCAAAGAGAAATACCTCCATTAGGACATCTTTCCAATCTCCATCATCTTGATTTATCCCACAATTCTCTTCAAGGTAAAATACCTCCATCACTAGGAAATCTTTCAGAACTCACTGATCTTGATTTATCCCACAATTCTCTTCAAGGTCAAATACCTTCATCACTAGGATTTCTAACCAATCTATTGACCCTAATAATCTCTAACAACAAAATCAATGGAACCTTTCCCATTTCACTTTCAAACATCATGCACCTTCAAAATATTGACATTTCACACAATCTACTAACAGGTTCCCTAGAACCTTTCTTAGTTGGACATTTTCCATTCTTGTATGGTCTGGATCTAAGCTACAATTGTCTTTCCGGAGCGATTCCTATGCCTCTTGATAGTATCTATGACATGAACCTTTCCTTCAATAATTTGAGTGGTCCTATTCCAAGTGGTGTAAATCCATATGCGCTAATTGGGAACAAGGATGTATGCAGCAACAATACAAATATACAAATAAAATACCAATTTCAGCCTTGTTCAGTCAACCAGAAGAAACGAAGGCAGCTGGTCATAATTCTTTCCATCACCATATTTCTAATCATGGCCTTCTTACTACTTTTATATCTGAGGAACAGCCGCATTGCAATCAAGAAAAAACAAGCAAAGATAACTGAAACATCTAAGAATGGGGACATGTTCTGCATATGGAACTACGACGGAAGCATAGCCTACGAAGACATCATTACAGTAACTGAAGACTTTGATCTTAAATATTGTATCGGAACAGGTGCGTATGGAAGTGTCTACAAGGCTCAATTACCAAGTGGAAAGATTGTTGCGGTGAAGAAACTCCATGGCTTTGAAGCAGAGGTCCCCACTTTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCGGAAATAAAGCACCGACATATAGTCAAGCTCCATGGATTCTGCTTGCACAAAAGAATAATGTTTTTGATTTATGAGTACATGGAGAAAGGAAGCTTGCTTTCTGTGTTGCATTATGACATGGAAGCAATAGAATTTGACTGGAAAAAGAGGGTTAACACAGTGAAAGGAACTGCACATGCTCTCTCATATCTCCATCATGATTGTGTCCCTCCAATAGTGCATAGAGACATATCAGCAAGCAACGTCTTGCTTAACTCCAAGTGGGAGCCCATTGTTTCCGACTTTGGCACTGCCCGATTTCTAAACTTTGATTCATCCAATCGAACTATAGTTGCTGGAACCATTGGATACATAGCACCTGAGCTCGCGTATACAATGGTTGTGAATGAAAAGTGTGATGTGTATAGCTACGGAGTGGTGGCACTGGAAACTTTGATGGGAAAACATCCTAAGGAAATACTCTCATCACTTCAATCAACTTGTATTCATGATGACATCAAATTATGTGATATATTGGATCAACGCCTCTCACACCCAACATTCTCAGTTTTACAAGACATAGTTGTTGTTGCCATTGTGACTTTTGCATGCTTAAATCCCAATCCTTGTTCTCGTCCAACAATGAAACACATCTCTCAATGTTTCCTTAGTCAACTCAAACCATTAAACATTCCTTTACATCAAATTTCGTTGCAACAACTCATGAGTCAAGAATTCAGACACTCTTTGAAATTGTAA 2685 0.3657 MHGVNGGAKGLSQYYKNEQIGSMVLSEHNLVKLEFLINIPSIYYLYFQTMQLLVSNFHLLIYVFVFMGSVFELGCASTPSQLQLEASAVINSGWWNLSHSQSLHICSKIDGIHCNDAGSVTRITYKYSKQPIELATLNLPAFKNLEHLELSYILKGTIPSEIGNMSNLRHLDFSYNFLQGEIPLTIGNLSKLTFLNLSFNYLQSQIPPSVKNLLKLTYFDLAFNSLQGEIPLSIKNLSNLTYLNLMGNSLEGEILPSIGHLSKLNYLNLARNSLQGQTPLTIRNLSKLTYLDLSHNSLQGQIPLSLGNLSKLTYLYLSHNYLQDKIPPTIGNISQLTYIDLSYNYLQREIPPLGHLSNLHHLDLSHNSLQGKIPPSLGNLSELTDLDLSHNSLQGQIPSSLGFLTNLLTLIISNNKINGTFPISLSNIMHLQNIDISHNLLTGSLEPFLVGHFPFLYGLDLSYNCLSGAIPMPLDSIYDMNLSFNNLSGPIPSGVNPYALIGNKDVCSNNTNIQIKYQFQPCSVNQKKRRQLVIILSITIFLIMAFLLLLYLRNSRIAIKKKQAKITETSKNGDMFCIWNYDGSIAYEDIITVTEDFDLKYCIGTGAYGSVYKAQLPSGKIVAVKKLHGFEAEVPTFDESFRNEAKVLSEIKHRHIVKLHGFCLHKRIMFLIYEYMEKGSLLSVLHYDMEAIEFDWKKRVNTVKGTAHALSYLHHDCVPPIVHRDISASNVLLNSKWEPIVSDFGTARFLNFDSSNRTIVAGTIGYIAPELAYTMVVNEKCDVYSYGVVALETLMGKHPKEILSSLQSTCIHDDIKLCDILDQRLSHPTFSVLQDIVVVAIVTFACLNPNPCSRPTMKHISQCFLSQLKPLNIPLHQISLQQLMSQEFRHSLKL 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14112g00001 894 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 281 865 - -
Vium14112g00001 894 Gene3D Phosphorylase Kinase; domain 1 556 675 - -
Vium14112g00001 894 Pfam Leucine Rich repeats (2 copies) 287 326 IPR025875 -
Vium14112g00001 894 Pfam Leucine Rich repeats (2 copies) 358 395 IPR025875 -
Vium14112g00001 894 ProSiteProfiles Protein kinase domain profile. 597 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14112g00001 894 SUPERFAMILY Protein kinase-like (PK-like) 576 862 IPR011009 -
Vium14112g00001 894 SMART LRR_typ_2 189 212 IPR003591 -
Vium14112g00001 894 SMART LRR_typ_2 380 404 IPR003591 -
Vium14112g00001 894 SMART LRR_typ_2 356 379 IPR003591 -
Vium14112g00001 894 SMART LRR_typ_2 285 308 IPR003591 -
Vium14112g00001 894 SMART LRR_typ_2 309 333 IPR003591 -
Vium14112g00001 894 SMART LRR_typ_2 261 284 IPR003591 -
Vium14112g00001 894 FunFam Nuclear pore complex protein NUP107 79 232 - -
Vium14112g00001 894 Pfam Protein kinase domain 602 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14112g00001 894 Gene3D Ribonuclease Inhibitor 80 208 IPR032675 -
Vium14112g00001 894 Gene3D Transferase(Phosphotransferase) domain 1 676 872 - -
Vium14112g00001 894 PRINTS Leucine-rich repeat signature 288 301 - -
Vium14112g00001 894 PRINTS Leucine-rich repeat signature 356 369 - -
Vium14112g00001 894 SUPERFAMILY RNI-like 35 276 - -
Vium14112g00001 894 ProSiteProfiles Leucine-rich repeat profile. 358 381 IPR001611 GO:0005515
Vium14112g00001 894 FunFam MDIS1-interacting receptor like kinase 2 676 870 - -
Vium14112g00001 894 SUPERFAMILY RNI-like 205 495 - -
Vium14112g00001 894 Gene3D Ribonuclease Inhibitor 301 399 IPR032675 -
Vium14112g00001 894 FunFam Leucine-rich repeat protein kinase family protein 560 675 - -
Vium14112g00001 894 Gene3D Ribonuclease Inhibitor 209 300 IPR032675 -
Vium14112g00001 894 Gene3D Ribonuclease Inhibitor 400 516 IPR032675 -
Vium14112g00001 894 ProSitePatterns Protein kinases ATP-binding region signature. 603 626 IPR017441 GO:0005524
Vium14112g00001 894 FunFam Piriformospora indica-insensitive protein 2 254 351 - -
Vium14112g00001 894 ProSiteProfiles Leucine-rich repeat profile. 335 357 IPR001611 GO:0005515
Vium14112g00001 894 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515
Vium14112g00001 894 SMART LRR_sd22_2 404 430 - -
Vium14112g00001 894 SMART LRR_sd22_2 213 239 - -
Vium14112g00001 894 SMART LRR_sd22_2 285 306 - -
Vium14112g00001 894 SMART LRR_sd22_2 165 191 - -
Vium14112g00001 894 SMART LRR_sd22_2 356 382 - -
Vium14112g00001 894 SMART LRR_sd22_2 309 335 - -
Vium14112g00001 894 FunFam Piriformospora indica-insensitive protein 2 352 447 - -
Vium14112g00001 894 ProSitePatterns Tyrosine protein kinases specific active-site signature. 721 733 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14112g00001 Vium-Chr14112 7651 10696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14112g00001 141 769 Receptor kinase-like Gene Family AT4G08850 37.822 5.38e-130 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium14112g00001 Pkinase 4.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14112g00001 - - vum:124822324 1757.65