Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14105g00003 ATGCCTCATTCTTCTTCTTCTTCTTCTCCCGTTTCAACCATTTCCAATCTCCGTATTCGCGCCCTAATACTTTGGTCCTCCAAGAACTACGCAATAGCTGCATTCGTTTTCCTCCTACTCTTCTCCCTCACTCTCTTCTCTCACTTGGATTCCCGTTCCCGTTCGCATTCCCGTTACCCCTCCCATCCACGCTCCACCCTCGTTCCCTTAACGCTCCTCCATAACGCCAACCGAACGCGCGCGCTTTGCTTGGACGGGAGCGCCCCCGGTTACCACTTCCAAAGCGGGTTCGGATCCGGATCTCTCAATTGGTTGCTCCACATTGAGGGAGGAGGGTGGTGCAATTCAATAGCTTCATGTACTCAACGAAAATTCACCCATTTGGGGTCTTCCAATTATATGGAAAAAAGTATTCCTTTTTCAGGAATACTGAGCTCTGACCCCTCTCAAAACCCAGATTTCTTTAACTGGAACAAGGTGAAGATTCGCTATTGTGATGGTGCATCTTTTGCTGGTCACCCCGAGAGCGAGCAGAGAGGAAGTGAGTTATTGTTCAGAGGCCAGGTCATATGGGAAGCTATTATGGATGAACTCTTATCAATTGGCCTGTCCAAAGCAAAGCAGGCGTTGCTCTCAGGATGCTCTGCTGGAGGGTTAGCAGCTCTTATACACTGTGACAACTTCCGGCAATTACTTCCAAAAGAAGCAACTGTTAAGTGCCTTTCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTAGCGGAAACAGTACAATGAGATCCTTCTATCATGATGTTACCCAGCTGCAGGGTCTTGCAAAAAGTTTGCACAAAGATTGCATTGATAAAATGGAACCATACAAGTGTCTGTTTCCACAAGAAATTGTTAAAAACATAAAGACTCCACTGTTCCTTGTTCATCCAGCGTATGATTTCTGGCAGATACGCAATATCTTGGTACCTCAAGGATCAGATCCCCTTGGTCACTGGCAAAGCTGCAGACAGAATATTCGCAATTGTAATGCTAACATGATTGATAAACTTGATGGTTACCGTGGCTCTTTGCTGAAGACTTTGAATGACTTCCAACAACGAAAAGAGATGGGAATGTTTATAAATTCCTGCTTTATCCATTGCCAAACTGAGATGGAAGTAACGTGGCATTCATCCAACTCTCCTAAAATAAATGATAAGACAATTGCTGAATCTGTTGGTGATTGGTACTTTGATCGAGAAGCTGTAAAGCGTATTGATTGCTCTTCTTTTCCCTGCAATCCCACTTGCCACAATATGGATCTCACTTGA 1305 0.4475 MPHSSSSSSPVSTISNLRIRALILWSSKNYAIAAFVFLLLFSLTLFSHLDSRSRSHSRYPSHPRSTLVPLTLLHNANRTRALCLDGSAPGYHFQSGFGSGSLNWLLHIEGGGWCNSIASCTQRKFTHLGSSNYMEKSIPFSGILSSDPSQNPDFFNWNKVKIRYCDGASFAGHPESEQRGSELLFRGQVIWEAIMDELLSIGLSKAKQALLSGCSAGGLAALIHCDNFRQLLPKEATVKCLSDAGFFLDEKDISGNSTMRSFYHDVTQLQGLAKSLHKDCIDKMEPYKCLFPQEIVKNIKTPLFLVHPAYDFWQIRNILVPQGSDPLGHWQSCRQNIRNCNANMIDKLDGYRGSLLKTLNDFQQRKEMGMFINSCFIHCQTEMEVTWHSSNSPKINDKTIAESVGDWYFDREAVKRIDCSSFPCNPTCHNMDLT 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14105g00003 434 PANTHER NOTUM-RELATED 40 431 IPR004963 GO:0016787
Vium14105g00003 434 Pfam Pectinacetylesterase 65 412 IPR004963 GO:0016787
Vium14105g00003 434 SUPERFAMILY alpha/beta-Hydrolases 171 321 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14105g00003 Vium-Chr14105 18505 29919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14105g00003 15 399 Carbohydrate Esterase AT3G09410 57.069 1.78e-164 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14105g00003 K19882 - gmx:100792819 734.561