Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14102g00005 ATGGCTTCCTCAAGCGGAACATGTTCGGGTTCATCCTCTCTGCTTCAGAACTCGGGTTCTGAGGAGGACTTGCAAGCATTAATGGATCAGAGAAAGAGGAAGAGAATGACATCGAATCGCGAATCTGCACAGCGATCTCGCATGAGGAAGGAGAAGCACTTGGACGATCTGGTTACCCAAGTGGCTCAGCTGAGAAAGGAGAATCAGCAGATACTCACCACCGAACGAGATCATTGGTTAGAGTCTCTGAACGAGATCATCGAACTCTGGTTGTGTGTGAGAAGGAGAGGGGAAGATGAAGTGGAAATTCCCACTGTGCCCTTTCTCTAA 330 0.4879 MASSSGTCSGSSSLLQNSGSEEDLQALMDQRKRKRMTSNRESAQRSRMRKEKHLDDLVTQVAQLRKENQQILTTERDHWLESLNEIIELWLCVRRRGEDEVEIPTVPFL 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14102g00005 109 Pfam bZIP transcription factor 31 72 IPR004827 GO:0003700|GO:0006355
Vium14102g00005 109 CDD bZIP_plant_GBF1 32 74 IPR045314 GO:0003700|GO:0006355
Vium14102g00005 109 Coils Coil 47 74 - -
Vium14102g00005 109 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 73 - -
Vium14102g00005 109 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
Vium14102g00005 109 FunFam BZIP transcription factor 29 79 - -
Vium14102g00005 109 MobiDBLite consensus disorder prediction 1 24 - -
Vium14102g00005 109 MobiDBLite consensus disorder prediction 25 53 - -
Vium14102g00005 109 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 71 IPR004827 GO:0003700|GO:0006355
Vium14102g00005 109 MobiDBLite consensus disorder prediction 1 53 - -
Vium14102g00005 109 SUPERFAMILY Leucine zipper domain 31 74 IPR046347 GO:0003700|GO:0006355
Vium14102g00005 109 Gene3D - 29 85 - -
Vium14102g00005 109 SMART brlzneu 27 85 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14102g00005 Vium-Chr14102 47614 47957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14102g00005 2 94 bZIP Transcription Factor Family AT1G75390 53.333 1.40e-25 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium14102g00005 bZIP_1 1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14102g00005 K25786 - var:108328653 122.479