Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14084g00001 ATGTTCAATGATGTTGATTCTGTTTCCCAGTTCAGGGGAGGATTAGAGGAAACTACCAAGCTTCTTCCTTTTGGCCCTAAGCTTGTAACTGGTCTTCATTCAAATGGTGAAGAGCAGAAAAATAATTTTGGAAATCGTGGTGAACACAATTCCTTGCAGAGTGGAGTAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGACCGATCAAAGAAAAAAGGGAGGAAGAAGGAAACTGTGGATTTGAGGAATATTTTACTGATGTATGCCAATGACATTAGAGCTGCCACCGAATTACTAACACAAACTCGGCAACACTCTTCTCCCTTTGGAGATGCATCGCAGAAGGTAGCTCACTACTTCGCCAATGGTCTTGATGAACGCTTGGTTGAGGCTGGTTCTGGCGGTCATGAACAATTTTCTTTCCTGAACTCTCAGAGGATTACTACTGCAGAGTACCTGAAGGCATATGAAGTGTTTCTATCTTCCACCCCTTTCAAAAACTTTACATATTTCTTTGTAAACACAATGATTATGGAAGCTACTGCAAAATCAGAAACCGTCCATATCATTGATTTTGGCATCCTATATGGTTTCCTGTGGCCAATTCTTATAAAGTTTTTATCAAACAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAAAGTTTTCTCAACCAGGATTTCGTCCCTCTGAAAGGATTGAGGAGACAGGTCACCGTCTTGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAATATCATGTCGTAGCATCAAGAAACCCTAGACCTCAACTTCTCCCAATTCGATTTTTGATTCCGATTGATTTCGCAGAAGAGAATGGAGCTTTCAGCACTTACTTTTAA 870 0.4172 MFNDVDSVSQFRGGLEETTKLLPFGPKLVTGLHSNGEEQKNNFGNRGEHNSLQSGVVKGEERDGGKDRSKKKGRKKETVDLRNILLMYANDIRAATELLTQTRQHSSPFGDASQKVAHYFANGLDERLVEAGSGGHEQFSFLNSQRITTAEYLKAYEVFLSSTPFKNFTYFFVNTMIMEATAKSETVHIIDFGILYGFLWPILIKFLSNREGGPPKLRITGIKFSQPGFRPSERIEETGHRLANYCKRYNVPFEYHVVASRNPRPQLLPIRFLIPIDFAEENGAFSTYF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14084g00001 289 Pfam GRAS domain family 89 260 IPR005202 -
Vium14084g00001 289 MobiDBLite consensus disorder prediction 34 52 - -
Vium14084g00001 289 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 69 259 IPR005202 -
Vium14084g00001 289 MobiDBLite consensus disorder prediction 32 75 - -
Vium14084g00001 289 ProSiteProfiles GRAS family profile. 67 289 IPR005202 -
Vium14084g00001 289 MobiDBLite consensus disorder prediction 55 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14084g00001 Vium-Chr14084 4229 5152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14084g00001 53 261 GRAS Transcription Factor Family AT1G07530 48.649 1.46e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium14084g00001 GRAS 1.5e-47 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14084g00001 - - vum:124822308 569.696