Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14071g00001 ATGGCAACTCCAAGTTCCCGTAGATTCACGTACCATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTCGTGGTTTCACTGGTTATCTCTACAAAGCTCTCTGTGACAGGGGACTTCACACTTTCATGGATGATGACAAACTTCAAAGCGGAGAGGAAATCACACCAGCGCTTCTGAAAGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGCAACTATAATTCACTGCCAGAGTAAAGGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTAATGTCAGACATCAGAAAGATAGCTATGAAGAAGCATTGGCTAAGCATCAAAAGAGGTTCAAAGGGCAGGAGGAGAAGTTAAATAAATGGAAAATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTATCACTTGGGAGATGGGGATGAATACGAGTACAAGTTTATTGAGAGCATTCTTGAACGGGTTTCCACGGTGATTAATCATGCTCCTTTACATGTTGCGGATTACACAGTTGGCCTACCGTCACGGGTGCTGAAAGTCCAGATACTTTTGGATGTTGGATCGGAAGATGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGTTAGGGAAAACAACACTCTCTCTAGTAGTTTATAATTCGATTGCTGCTTATTTTGATGAATCATGTTTTCTTCAAAATGTAAGAAAAAATTCAAAAAACAAAGATGAGCTACAACACCTCCAAAGCATCTTTCTTTCAAAAATGCTTAGAGAGAAGAATATCATCTTAACAAGTTGGCAAGAAGGAGCATCAATGATACAGCAGAGGCTGGGGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAACAGAGAGCAGTTAGAAGCATTTGCTGGAAGTGCTGATTGGTTTGGACCCGGCAGCAGGGTTATCATTACCACTCGGGACGAACAGCTGCTAAAATCTCATGGGATTAAAAGAACTTATGAGATGGAGGCATTGAATTTTAATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGGGAAAATGNGGTTGACTTTGCAGAGAAAAAAGAGAAAAGTTTCACTGGTAATATCTAG 1146 0.4162 MATPSSRRFTYHVFLSFRGEDTRRGFTGYLYKALCDRGLHTFMDDDKLQSGEEITPALLKAIEESRIAIVVLSHNYASSSFCLDELATIIHCQSKGLLVIPVFYKVDPSNVRHQKDSYEEALAKHQKRFKGQEEKLNKWKMALRQVADLSGYHLGDGDEYEYKFIESILERVSTVINHAPLHVADYTVGLPSRVLKVQILLDVGSEDVVHMIGIHGMGGLGKTTLSLVVYNSIAAYFDESCFLQNVRKNSKNKDELQHLQSIFLSKMLREKNIILTSWQEGASMIQQRLGRKKVLLILDDVDNREQLEAFAGSADWFGPGSRVIITTRDEQLLKSHGIKRTYEMEALNFNDSLQLLIWNAFKRENXVDFAEKKEKSFTGNI 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14071g00001 381 Gene3D - 10 174 IPR035897 -
Vium14071g00001 381 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Vium14071g00001 381 Pfam NB-ARC domain 207 365 IPR002182 GO:0043531
Vium14071g00001 381 PRINTS Disease resistance protein signature 211 226 - -
Vium14071g00001 381 PRINTS Disease resistance protein signature 288 302 - -
Vium14071g00001 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 370 IPR027417 -
Vium14071g00001 381 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Vium14071g00001 381 Gene3D - 175 340 IPR027417 -
Vium14071g00001 381 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Vium14071g00001 381 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 365 IPR044974 GO:0006952
Vium14071g00001 381 SMART till_3 10 149 IPR000157 GO:0007165
Vium14071g00001 381 Coils Coil 115 142 - -
Vium14071g00001 381 Pfam TIR domain 11 175 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14071g00001 Vium-Chr14071 3134 4634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14071g00001 11 356 WRKY Transcription Factor Family AT4G12020 28.367 1.25e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14071g00001 - - vra:106763192 582.408