Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1405g00037 ATGATTTGGATAGCAATTCTTTTGCTTTCTCTTGCTTGTCTGCGGCTGTGGAGAAGGAACAGCAAGGCAAAGAAATTACCACCGGGTCCAAGAGGGTTGCCAATTTTGGGTAGCCTTCACAAGTTGGGACCAAATCCCCATCGTGATCTGCACCAACTAGCCAAAGAATATGGATCTGTCATGTACTTGCGGTTAGGTGTGGTGCCCACCATTGTTGTTTCTTCACCCCAAGCTGCTGAGCTCTTCCTCAAGACCCATGACCTTGTCTTTGCCAGTAGACCACCTCATGAAGCTGCAAGATACATCTCTTGGGAGCAGAGAAACTTAAGCTTTGGTGAATATGGTTCTTACTGGCGCAACATGCGGAAGATGTGCACGTTGGAATTGCTAAGCCAAACCAAGATTAACTCCTTCAGAAGCATGAGGGAAGAGGAGCTTGACCTATTGATCAAGGATCTGAGAGAGGCAGCGAAAGATGGAGCTGCTGTTAATCTCAGCGCCAAAGTTTCAACACTCAGCGCAGACATGGCTTGTAGAATGGTCTTTGGGAAGAAGTACACGGACCGGGACTTGGATGAGAAAGGGTTCAAGGCTGTGATGCAAGAGGGAATGCATTTAGCAGCAACTCCTAACATGGGAGATTACATCCCTTACATCGGTGCACTTGACCTACAAGGCTTAACTAAGCGAATGAAATCAGTTGGCAAAATATTCGATGACTTCTTTGAGAAAATCATTGACGAGCACATGCAATCACAGAAGGGAGAAGACAAGACAAAGGATTTTGTTGATGTCATGTTGGGATTCGTGGGTACTGAAGAATCCGAATACCGCATCGAGAGGCCCAACATCAAAGCCATATTGTTGGATATGTTGGCTGGCTCGATGGATACTTCTGCTACAGCAATAGAGTGGACACTTTCGGAGCTGCTAAAGAATCCAAGGATGATGAAGAAACTCCAAAAGGAACTGGAAAGCGTGGTGGGTATGGAGAGGAAGGTGGAAGAATCAGACTTAGAGAAGTTAGAGTATTTGGACATGGTTGTAAAGGAAAGCCTGAGACTGCATCCGGTGGCACCTTTGCTGATACCACACCAGTCCATAGAAGACTGCATGGTTGGAGAGTATTTCATTCCTAAAAAATCAAGGGTTATAGTGAATGCATGGGCCATTATGAGAGACCCAAGTGCTTGGGATGAAGCAGAGAAGTTCTGGCCAGAGAGATTTGAAGGAAGGAACATAGATGTAAGAGGGCGTGAGTTTGAGCTGATACCATTTGGGTCTGGCAGAAGGGGGTGTCCAGGAATACAGCTTGGTCTAACTGTGATTCGTCATACAGTCGCACAAGTTGTCCATTGTTTTGATTGGAAGCTTCCAAATAACATGTTACCATCGGAGTTGGATATGGCAGATGAGTTTGGCCTCACAATGCCAAGAGCTAATCCTCTGCGGGCCATTCCTACTTACAGGCTTCAATAG 1479 0.4604 MIWIAILLLSLACLRLWRRNSKAKKLPPGPRGLPILGSLHKLGPNPHRDLHQLAKEYGSVMYLRLGVVPTIVVSSPQAAELFLKTHDLVFASRPPHEAARYISWEQRNLSFGEYGSYWRNMRKMCTLELLSQTKINSFRSMREEELDLLIKDLREAAKDGAAVNLSAKVSTLSADMACRMVFGKKYTDRDLDEKGFKAVMQEGMHLAATPNMGDYIPYIGALDLQGLTKRMKSVGKIFDDFFEKIIDEHMQSQKGEDKTKDFVDVMLGFVGTEESEYRIERPNIKAILLDMLAGSMDTSATAIEWTLSELLKNPRMMKKLQKELESVVGMERKVEESDLEKLEYLDMVVKESLRLHPVAPLLIPHQSIEDCMVGEYFIPKKSRVIVNAWAIMRDPSAWDEAEKFWPERFEGRNIDVRGREFELIPFGSGRRGCPGIQLGLTVIRHTVAQVVHCFDWKLPNNMLPSELDMADEFGLTMPRANPLRAIPTYRLQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1405g00037 492 Gene3D Cytochrome P450 13 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS E-class P450 group I signature 346 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS E-class P450 group I signature 54 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS E-class P450 group I signature 172 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Vium1405g00037 492 FunFam Cytochrome P450 83B1 14 486 - -
Vium1405g00037 492 CDD CYP71-like 56 483 - -
Vium1405g00037 492 SUPERFAMILY Cytochrome P450 27 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 Pfam Cytochrome P450 27 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00037 492 PANTHER CYTOCHROME P450 93A3-LIKE 3 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1405g00037 Vium-Chr1405 315159 317043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1405g00037 2 488 Cytochrome P450 AT3G26300 39.192 1.49e-130 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1405g00037 K20562 - gmx:100809526 842.032