Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1405g00032 ATGAAGCTACTGTCGGGAGTACAGTTTGAAATATGGCAAAAAGCTTGGATGATTTGGTTACCACTTTTTGCAGTATTTCTTACTTACCTGTGGCTATGGAGAAGAAGCAAGAAAAATGGAAAGAGATTACCACCTGGTCCCAAAGGGTTTCCTATTTTGGGGAGTCTTCACATGTTGGGGAAACACCCTTATCGTGATCTACACCAACTAGCTCAAAAATATGGACCTATCATGCACATGCGATTGGGTTTTGTGCCCACCATAGTTGTTTCTTCACCCAAAGCTGCTCAACTCTTCCTCAAGACCCATGATCTTATCTATGCCAGCAGACCACCTCTTGAAGCTGCAAAGTACATCTCTTGGGAGCAGAGGAACTTAGCTTTTGCTCAATATGGTTCTTACTGGCGCAACACTCGTAAGATGTGCACGTTGGAATTACTAAGCCAGGCCAAAATTAACTCCTTTAGACCACTGAGGGATGCTGAGCTAGACCTGTTGGTGAAGCATCTGAGAGAGGCAGCCAAGGATGGAGCTGTGGTTGATCTAAGTGCCAGAGTTGCAGCACTCATTGCAGACACTGCTTGCAGAATGATTTTAGGGAAGAAGTACATGGACCAGGACTTGGATGAGAAGGGTTTCAAGGCTGTGATAACAGAGATAATGTACTTGACAGCAACTCCTAACATAGGCGATTACATTCCTTATATCGGTAAACTTGACCTTCAAGGGCTAATCAAGCGAATGAAGGCGACGCGAAAAATCTTTGATGAGTTCTTTGACAAAATCATCGATGAACATATTGAATCAAAGAAGGGGGAGAACGAGGTAAAGGACTTTGTCGACGTCATGCTGGGATTACTCGGTACTGAAGAATCGGAGTACTGCGTTGAAAGACCCAATATCAAAGCCATATTGCTGGATATGTTGGCTGGTTCAATAGATACTTCTGCGACAGCAATAGAGTGGGCACTTTCGGAGCTGATAAAGAATCCAAGGGTGATGAAGAAACTCCAAATGGAACTGGAAAGCGTGGTGGGTATGGAGAGGAAGGTGGAAGAATCAGACTTAGAGAAGTTAGAGTATTTAGACATGGTTATAAAGGAAAGCATGAGGCTGCATCCAGTGGCACCGTTGCTGATACCACACGAGTCAAGGGAAGATTGCATGGTTGGAGAGTTTTTCATTCCTAAAAAGTCAAAGGTGATAGTGAATGCATGGGCTATTATGAGAGATCCAAGTGCTTGGAATGATGCAGAAAAGTTCTGGCCAGAGAGATTTGAGGGAAGCAGCATAGATCTGAAAGGGCATGACTTCGAGCTGATACCATTTGGATCTGGAAGAAGAAGCTGTCCAGGAATGCAACTTGGTCTAACTCTGGTTCGTCAGACAGTGTCACAAGTTGTCCATTGTTTTGATTGGAAGCTTCCAAATAACATGTTACCATATGAGTTGGACATGACAGAGGAGTTTGGACTCGCAATGCCAAGGGCCAATCATCTTCTTGCCATTCCCACTCACCGCCTTCACTGTCACACTGATTGA 1542 0.4429 MKLLSGVQFEIWQKAWMIWLPLFAVFLTYLWLWRRSKKNGKRLPPGPKGFPILGSLHMLGKHPYRDLHQLAQKYGPIMHMRLGFVPTIVVSSPKAAQLFLKTHDLIYASRPPLEAAKYISWEQRNLAFAQYGSYWRNTRKMCTLELLSQAKINSFRPLRDAELDLLVKHLREAAKDGAVVDLSARVAALIADTACRMILGKKYMDQDLDEKGFKAVITEIMYLTATPNIGDYIPYIGKLDLQGLIKRMKATRKIFDEFFDKIIDEHIESKKGENEVKDFVDVMLGLLGTEESEYCVERPNIKAILLDMLAGSIDTSATAIEWALSELIKNPRVMKKLQMELESVVGMERKVEESDLEKLEYLDMVIKESMRLHPVAPLLIPHESREDCMVGEFFIPKKSKVIVNAWAIMRDPSAWNDAEKFWPERFEGSSIDLKGHDFELIPFGSGRRSCPGMQLGLTLVRQTVSQVVHCFDWKLPNNMLPYELDMTEEFGLAMPRANHLLAIPTHRLHCHTD 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1405g00032 513 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS E-class P450 group I signature 363 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 Pfam Cytochrome P450 44 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 Gene3D Cytochrome P450 29 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506|GO:0016705
Vium1405g00032 513 SUPERFAMILY Cytochrome P450 44 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1405g00032 513 CDD CYP71-like 73 500 - -
Vium1405g00032 513 PANTHER CYTOCHROME P450 93A3-LIKE 19 509 - -
Vium1405g00032 513 FunFam Cytochrome P450 83B1 31 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1405g00032 Vium-Chr1405 268249 270120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1405g00032 50 510 Monolignol Biosynthesis Gene Families AT4G36220 41.545 2.31e-130 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1405g00032 K20562 - vun:114179959 952.584