Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1405g00029 ATGACAGGGAAGAGAAACCAGACACCAACAACAACAACAGCAACAACAATAAGTCCTGTGGGAAGTCCAACTTCTGGTAACATCTCAGACAGCTCCTCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAACGTTAGCCGCATCATGAAAAGGGCACTCCCTCCCAATGCAAAAATCTCAAAGGAAGCCAAAGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATCAGCTTCATCACCGGTGAGGCCTCAGACAAGTGCCAGAGAGAAAAGAGGAAGACCATCAACGGTGATGATCTTCTCTGGGCCATGACAACCCTAGGATTTGAGAACTATGTTGGACCCTTGAAGCTCTACCTCAACAACTACCGGGAAACTGAGGGAGAAAAGAGTTCCATGGCCAAACAAGAAGAACACTCTCCAACTCATCAAACCAATGATGGGCTGCCTGAACTCAACAAGTTGCCTCATTCTTCTGCAACAAAACCAGACTTCAACAACTCTTTCACTGCTGGCTTCTATTCTGTGGGGCCTCAATTAACACCTCCAAAGAGCTTCACAGATATTGGAGGAATCAACGGTTATAGAGAGACCTCCATGAACAGTGTCATTGCTCAAAGTGCGGTCAGTGCTGATCAAGATGCAAGTGGTAATAGAATGATGCCATCTGACCTACGTTATAGGGTTGAATGGTAG 693 0.4603 MTGKRNQTPTTTTATTISPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSMAKQEEHSPTHQTNDGLPELNKLPHSSATKPDFNNSFTAGFYSVGPQLTPPKSFTDIGGINGYRETSMNSVIAQSAVSADQDASGNRMMPSDLRYRVEW 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1405g00029 230 MobiDBLite consensus disorder prediction 1 37 - -
Vium1405g00029 230 FunFam Nuclear transcription factor Y subunit B-3 28 150 - -
Vium1405g00029 230 Gene3D Histone, subunit A 28 161 IPR009072 GO:0046982
Vium1405g00029 230 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 145 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium1405g00029 230 MobiDBLite consensus disorder prediction 128 143 - -
Vium1405g00029 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Vium1405g00029 230 MobiDBLite consensus disorder prediction 128 160 - -
Vium1405g00029 230 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vium1405g00029 230 SUPERFAMILY Histone-fold 36 147 IPR009072 GO:0046982
Vium1405g00029 230 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Vium1405g00029 230 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Vium1405g00029 230 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1405g00029 Vium-Chr1405 233513 234891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1405g00029 21 136 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.448 2.87e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium1405g00029 CBFD_NFYB_HMF 1.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1405g00029 K08065 - gmx:100810059 351.673