Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1405g00021 ATGGCGCCGAAGCAGGGAACGCGAAAGGTTAGCAGAAACCCCGAATTGATAAGGGGCATTGGGAAGTACTCGAGATCGCAGATGTACCACAAGAGAGGGATTTGGGCGATCAAGGCTAAAAACGGCGGCGTTTTCCCTCGCCACGACCCTACTCCCAAACCCCAATCTCCCGCTCTTAAACCTCCCAAATTTTACCCTGCTGATGATGTGAAGAGGCCCCTTCTCAACAAGCACAAACCCAGACTCACTAAGCTCAGGGCTAGCGTTACCCCTGGCACAGTATTGATTCTTCTTGCCGGTAGATTTAAGGGAAAGAGAGTAGTGTTTTTGAAGCAGCTTCCTTCCGGGTTGCTTCTCGTAACTGGTCCTTTTAAGATCAACGGAGTTCCATTGAGACGTGTGAACCAGTCATATGTTATTGCCACATCAACCAAAGTAGATGTTTCTGCTGTTAACGTTGATAAATTTGATGACAAATACTTTTCAAAGGAATCCCAGAAAAAGAAGAAGAAGGGAGAGGGCGAGTTTTTTGAGGCTGAGAAGGAGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGATCAGAAAAGTGTGGACTCTGCATTGATAAAAGCCATAGAGAGTGTGCCAGACTTGAATGCTTATCTGGGTGCCAGGTTTTCTTTAAAGGATGGTGTGAAACCTCATGAGCTAGTCTTTTAG 702 0.463 MAPKQGTRKVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHDPTPKPQSPALKPPKFYPADDVKRPLLNKHKPRLTKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVNVDKFDDKYFSKESQKKKKKGEGEFFEAEKEEKSVLPQQKKDDQKSVDSALIKAIESVPDLNAYLGARFSLKDGVKPHELVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1405g00021 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vium1405g00021 233 CDD KOW_RPL6 81 233 IPR041997 -
Vium1405g00021 233 ProSitePatterns Ribosomal protein L6e signature. 127 145 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vium1405g00021 233 MobiDBLite consensus disorder prediction 171 195 - -
Vium1405g00021 233 Pfam Ribosomal protein L6, N-terminal domain 3 57 IPR005568 GO:0003735|GO:0005840|GO:0006412
Vium1405g00021 233 Gene3D - 87 171 IPR014722 -
Vium1405g00021 233 FunFam 60S ribosomal protein L6 87 171 - -
Vium1405g00021 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Vium1405g00021 233 PANTHER 60S RIBOSOMAL PROTEIN L6 2 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1405g00021 Vium-Chr1405 176534 177909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1405g00021 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 78.112 3.57e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1405g00021 K02934 - gmx:100499766 390.963