Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1405g00015 ATGGATTTCTTCTACTTTGGAAACCCAAACCCTTCTCATACTCATCTCCATAACATGTCTCCATCATCCCCTGAGATCGCACTCTCTGATTTCCTCCTTCTCGATGATTTTCTTCATCATCATCACGGAGACTCTCTATCATCTCAAAGCACGGAGTCGTCGGAAAAACCAACCTGTGACACCACTCACGGATTCACCACCGGTGCAACCTCTAAGAACAGCAACATCAACATAAAGTGCAAGAACGCGAATGGTGGAAGCAAAGCAAGGTTGGGTCCGAGAGTGGCATTCAGAACAAAATCAGAGCTTGAGATCATGGATGATGGATACAAGTGGAGGAAGTATGGTAAGAAGTCCGTGAAGAGCAGTCCAAATTTAAGGAACTATTACAAATGTTCAAGTGGAGGATGCCCAGTGAAGAAAAGGGTGGAAAGGGACAGAGAGGATTCCAGCTATGTGATAACAACGTATGAAGGTGTACACAATCATGAGAGCCCTTTTACCACATACTACAGCCCTATCTCTTTTCTACATTCTGATCATTCTACATCTTCCAAATGA 561 0.4385 MDFFYFGNPNPSHTHLHNMSPSSPEIALSDFLLLDDFLHHHHGDSLSSQSTESSEKPTCDTTHGFTTGATSKNSNINIKCKNANGGSKARLGPRVAFRTKSELEIMDDGYKWRKYGKKSVKSSPNLRNYYKCSSGGCPVKKRVERDREDSSYVITTYEGVHNHESPFTTYYSPISFLHSDHSTSSK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1405g00015 186 FunFam WRKY transcription factor 57 92 166 - -
Vium1405g00015 186 SUPERFAMILY WRKY DNA-binding domain 98 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1405g00015 186 SMART WRKY_cls 106 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1405g00015 186 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 169 IPR044810 GO:0003700
Vium1405g00015 186 Gene3D WRKY domain 93 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1405g00015 186 Pfam WRKY DNA -binding domain 107 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1405g00015 186 ProSiteProfiles WRKY domain profile. 101 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1405g00015 Vium-Chr1405 139650 140793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1405g00015 8 181 WRKY Transcription Factor Family AT5G64810 44.199 3.17e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1405g00015 WRKY 6.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1405g00015 - - gmx:100500248 251.521