Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1405g00006 ATGGGTCCCTTTACACTCTCCGTTATGTTTAATGACCCTGCCATTTCATTACCAGATGCTTGTTCGAAGAGAAAACAGAACTTTCTTCTGAAAAATTCTTTTGCATCGGTTAGCATGGGAGATGAAAAGCCTTTTGACTTCTTACGCACTTTATTTGAGGGCGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATCGACACTATTAAAACACGTCTGCAGGCTGCTCGCGGGGGAGAAAAACTAATATTGAAAGGCTTGTATTCCGGATTGGCAGGGAACCTTGCTGGTGTCTTACCGGCGTCTGCTTTATTTGTGGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAAAATCTTAGTGCCTTTAGCCATTTAACTGCAGGTGCCATTGGAGGCATTGCTGCTTCATTGATTCGTGTTCCAACAGAGGTTATCAAGCAACGAATGCAAACTGGGCAGTTTACTTCAGCTTCTGGTGCCGTTCGCTTTATTGCTTCTAAGGAAGGCTTCAAAGGATTTTATGCTGCACGAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGGTGCACTAACTGGAGCCATAACTACTCCCCTTGATGTCATCAAGACAAGACTAATGGTTCAAGGATCTGCAAACCAATACAAAGGAATTGTTGACTGTGTTCAAACTATTATTAAGGAAGAAGGACCTCGTGCCTTTTTGAAGGGTATTGGTCCCAGAGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGAGTACAAAACGTTTTCTTGCTGAGAGGCGTCCTATAGAATCTCAGCACACATACTCAGACAAAAGTAAAGATAAATAG 894 0.4183 MGPFTLSVMFNDPAISLPDACSKRKQNFLLKNSFASVSMGDEKPFDFLRTLFEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGEKLILKGLYSGLAGNLAGVLPASALFVGVYEPIKQKLLRIFPENLSAFSHLTAGAIGGIAASLIRVPTEVIKQRMQTGQFTSASGAVRFIASKEGFKGFYAARRNLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVQTIIKEEGPRAFLKGIGPRVLWIGIGGSIFFGVLESTKRFLAERRPIESQHTYSDKSKDK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1405g00006 297 Pfam Mitochondrial carrier protein 130 185 IPR018108 -
Vium1405g00006 297 Pfam Mitochondrial carrier protein 51 85 IPR018108 -
Vium1405g00006 297 Pfam Mitochondrial carrier protein 195 280 IPR018108 -
Vium1405g00006 297 SUPERFAMILY Mitochondrial carrier 52 272 IPR023395 -
Vium1405g00006 297 Gene3D Mitochondrial carrier domain 54 187 IPR023395 -
Vium1405g00006 297 Gene3D Mitochondrial carrier domain 188 292 IPR023395 -
Vium1405g00006 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 49 121 IPR018108 -
Vium1405g00006 297 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 27 186 - -
Vium1405g00006 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 195 277 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1405g00006 Vium-Chr1405 67436 76231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1405g00006 51 280 Chloroplast and Mitochondria Gene Families AT2G30160 28.472 1.61e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1405g00006 K15111 - gmx:100811130 509.605