LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1405g00001	ATGTCAACAACTTCACATACCATTGCTCACCACAGCTTATTTGAGGAGCAAGATCAGATTCATACACAGATGGGGTTCTTTCCCTTTCCATCAAACCTTACTTTGCCTCCTTTGGGTTGCCATCAATCCTCTCTGAAAGCCTTCACCTCCATAACAACACCTTCTTCACTTGCCATATCTCAACAGGATTCTTCTACATCAAATCTAACAGAAACCCTATTTCACAACTCAACTTCTACCTTTGGAGGAGCTCAGTTCCTGTCCTTGCATAGATCCAGTCTAAATCCATGGGCACTGGGAGAAGTGAGTGACTGCTTCGGCAGTAAAAGAAGTGGATTTGATGATCATCATCATCTGGGAATTTCAGCCATGAAGATGAAGAAAATGAAGGCAAGAAGGAAGGTTAGAGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTATTGGACGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCCAGAAGCTATTACCGTTGCACACAAGATAACTGTCGTGTAAAGAAACGCGTGGAGCGCTTAGCGGAGGATCCGAGAATGGTGATAACAACATATGAAGGGAGACATGTTCACTCTCCATCAAATGATCTTGAAGATTCTTCGTCTCCATCTCAACTTGGGAACTTCTTATGGTAG	687	0.4396	MSTTSHTIAHHSLFEEQDQIHTQMGFFPFPSNLTLPPLGCHQSSLKAFTSITTPSSLAISQQDSSTSNLTETLFHNSTSTFGGAQFLSLHRSSLNPWALGEVSDCFGSKRSGFDDHHHLGISAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLEDSSSPSQLGNFLW	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1405g00001	228	FunFam	WRKY transcription factor 57	137	211	-	-
	Vium1405g00001	228	Pfam	WRKY DNA -binding domain	152	208	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium1405g00001	228	Gene3D	WRKY domain	138	204	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium1405g00001	228	ProSiteProfiles	WRKY domain profile.	146	211	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium1405g00001	228	MobiDBLite	consensus disorder prediction	213	228	-	-
	Vium1405g00001	228	MobiDBLite	consensus disorder prediction	207	228	-	-
	Vium1405g00001	228	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	79	212	IPR044810	GO:0003700
	Vium1405g00001	228	SMART	WRKY_cls	151	210	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium1405g00001	228	SUPERFAMILY	WRKY DNA-binding domain	143	210	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1405g00001	Vium-Chr1405	130	2026	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1405g00001	121	228	WRKY Transcription Factor Family	AT4G39410	77.876	7.58e-62	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vium1405g00001		WRKY	9.6e-25	CL0274