Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1404g00011 ATGTTACTCCCTTACCTGCTTCCACAAAGCAGCAATCACACTCTCACACCCTTGGCGCTTTTCCCTTGTTTCCTTTTGAGCTTTTTCCAGAAACTCTCACAAACATTCAGACCTCCTTTCTGTATTGTTTTTGCAGTGATGGGTGGCAGTGGGGAGAAGAGAGTGAAGGGTTTTCAGGGGAAGAAGGAAGGGTTCCGAGGAGGAGTGCCGAAAGGGTGTTTGGCCATAAAGGTGGGTCAAGGAGAAGACCAACAACGGTTTGTGGTGCCAGTCATGTACTTCAATCACCCACTCTTCATGCAGCTTCTCAAGGAAGCAGAGGAAGAGTACGGCTTCGATCAAAAGGGAACCATAACCATCCCTTGTCACGTCGAGCAGTTCAGGAACGTTCGAGGCATCATCGACGGCGAAAAGTCTCTCCTTCATAACAATCACGTTCGCTGCTTCGGCTTCTGA 456 0.4912 MLLPYLLPQSSNHTLTPLALFPCFLLSFFQKLSQTFRPPFCIVFAVMGGSGEKRVKGFQGKKEGFRGGVPKGCLAIKVGQGEDQQRFVVPVMYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEQFRNVRGIIDGEKSLLHNNHVRCFGF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1404g00011 151 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 59 129 IPR003676 GO:0009733
Vium1404g00011 151 Pfam Auxin responsive protein 37 130 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1404g00011 Vium-Chr1404 73711 74473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1404g00011 69 142 Calmodulin-binding Proteins AT5G20810 47.297 1.93e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1404g00011 K14488 - var:108342322 315.464