Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1404g00010 ATGGTTTCCTTCCCTCCAGATTGGACGACTGTTGTTTTAGTGCCTACTGATATGGGGGTGGTGGAGATGGGGTCTGTGAGGATGGTGGGTGAGAGTTTTGAGCTTTTGCAGGCTTTGAAGTCTGTGTTTTCTGCACAGGCATCGTTGGTCCCTCTCAGGATTAAGCCAATTACACCATTTGATTTGGTGAGTGAGAAGAGAGATGATAATGCAAATGCCCCTTTTTCTGGTGTGGCAATTGGGGATAAGGAAAAGAATAACAGCAGCAATGCTAGTAATAATAGAGTAGAAGGAAACGGAGTTCCAAAGATTTTTGGGCAAGATTTGAACAGTGTGACTCAATTCAGAGAGAAACTTGCTGTGAGGAAAATGGAAGAGAGGCCGAGGGCGTGGGGAGCTCATCCCAATGGGAATAGTGTTGGTTTTCCAAATGGTATCCATGGTTCTGGTTGGGGGGCCGGTCAAGTTGTGAGACAGCTTGGTCCTCCTGAAATTCATGCTCCTAGGTTGTCCACCTCCGGTGCATTGTCGGTGCCGGAGCTGGCCAATGGCACGAGGCATGATTTTGTGCATAACAATTATCAGCAGCAGCAACGGAAGGCTCAGATGCAAATTGATTTCTCAGGAGCAACTTCAAGGGCTTCAGGGAGATCAATCATTGCGGAATCTGAGATTTCTGATGTTGAGGCATCGTGCAAGGAGGAGAGAGCGAATGTTGCCGATGACAGGAGGCCGAGGAAACGGGGAAGGAAGCCGGCCAATGGAAGGGAGGAGCCCCTCAACCATGTGGAGGCAGAGAGGCAAAGGAGGGAGAAGCTAAACCAGTGGTTCTATGCCCTGCGTGCGGTTGTTCCAAATATCTCAAAGATGGACAAAGCATCTCTATTGGGAGATGCTATTGCTTACATCAATGAACTTCAAGCGAAACTCAAGACGATGGAGGCTAGGTGGCGGCGACCTTGCGTTGGAGGTTCGACAGCTATCTGCGTTTCCCCTTATGTGTTTCTGTACTGTTAG 1017 0.4887 MVSFPPDWTTVVLVPTDMGVVEMGSVRMVGESFELLQALKSVFSAQASLVPLRIKPITPFDLVSEKRDDNANAPFSGVAIGDKEKNNSSNASNNRVEGNGVPKIFGQDLNSVTQFREKLAVRKMEERPRAWGAHPNGNSVGFPNGIHGSGWGAGQVVRQLGPPEIHAPRLSTSGALSVPELANGTRHDFVHNNYQQQQRKAQMQIDFSGATSRASGRSIIAESEISDVEASCKEERANVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQWFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMEARWRRPCVGGSTAICVSPYVFLYC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1404g00010 338 MobiDBLite consensus disorder prediction 71 102 - -
Vium1404g00010 338 Pfam Helix-loop-helix DNA-binding domain 261 307 IPR011598 GO:0046983
Vium1404g00010 338 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 43 IPR025610 -
Vium1404g00010 338 CDD bHLH_AtAIB_like 254 316 - -
Vium1404g00010 338 MobiDBLite consensus disorder prediction 233 266 - -
Vium1404g00010 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 306 IPR011598 GO:0046983
Vium1404g00010 338 MobiDBLite consensus disorder prediction 82 97 - -
Vium1404g00010 338 PANTHER MYC 9 316 IPR045084 GO:0003700|GO:0006355
Vium1404g00010 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 322 IPR036638 GO:0046983
Vium1404g00010 338 Gene3D - 250 319 IPR036638 GO:0046983
Vium1404g00010 338 SMART finulus 263 312 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1404g00010 Vium-Chr1404 66812 68488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1404g00010 10 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 45.253 7.97e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1404g00010 HLH 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1404g00010 - - vum:124826269 664.07