Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1404g00009 ATGTCAGATATTGCGGAATATTCTCATTCATCGAATGCAGGCACGAGAAAGAAGAGGAGCATAAACAAAAAAAGGTTCAGCGATGGACAAGTTAAATCACTGGAATCCATGTTCGAGACAGACTCCAGACTGGAACCGGCAAAGAAATTGGAGGTGGCAAGAGAGCTTGGCTTGCAACCAAGACAAGTTGCCATATGGTTTCAGAACAAGAGAGCTCGATGGAAGCTAAAGCAGCTTCAGCGAGACTACACCACGCTTCGAGCCAATTATAAGACGTTGGATTCAAGGTTTGATGCTCTCAACAAAGAGTATCAATCAATGTTAACACAGTTGCAGGATCTGAAAAATCGATTACAGAAGCCCCTAGAACAAACTGAGAGTTGTAGTACGCGATACAAAGCAGCAAACAGCATGGAGAGTGAAGCGCGAAATGGAGAAACAGTCAAAAGAGAACAGGAGATAAAGCGGCCTTGCTGGACAGCAGGAAGATCAGAAGGCATTGTTCGTAGTGTTATCTCGGACTGTGACAGCAGCATAAAGGCAAAACAATACTTTGGTGTGGAAGATGAAGCTTCTCTTCTGAACTTTGTCGAGAACACCGATGGTTCTTTGACAACACCACAACATTGGGGTTTGTTGGAATCAGATGATATCATGGGCTGTGATTACCAATGGTGGGACTTCTGGTCCTGA 693 0.443 MSDIAEYSHSSNAGTRKKRSINKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQLQRDYTTLRANYKTLDSRFDALNKEYQSMLTQLQDLKNRLQKPLEQTESCSTRYKAANSMESEARNGETVKREQEIKRPCWTAGRSEGIVRSVISDCDSSIKAKQYFGVEDEASLLNFVENTDGSLTTPQHWGLLESDDIMGCDYQWWDFWS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1404g00009 230 Gene3D - 11 85 - -
Vium1404g00009 230 MobiDBLite consensus disorder prediction 1 15 - -
Vium1404g00009 230 Pfam Homeobox associated leucine zipper 77 119 IPR003106 GO:0006355|GO:0043565
Vium1404g00009 230 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Vium1404g00009 230 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Vium1404g00009 230 Pfam Homeodomain 23 75 IPR001356 GO:0003677
Vium1404g00009 230 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Vium1404g00009 230 FunFam Homeobox-leucine zipper protein ATHB-7 5 77 - -
Vium1404g00009 230 Coils Coil 69 117 - -
Vium1404g00009 230 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 18 148 IPR045224 GO:0003700
Vium1404g00009 230 CDD homeodomain 16 78 IPR001356 GO:0003677
Vium1404g00009 230 SMART HOX_1 15 81 IPR001356 GO:0003677
Vium1404g00009 230 MobiDBLite consensus disorder prediction 1 28 - -
Vium1404g00009 230 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
Vium1404g00009 230 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1404g00009 Vium-Chr1404 60128 61370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1404g00009 25 230 Homeobox Transcription Factor Family AT3G61890 46.977 2.62e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium1404g00009 Homeodomain 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1404g00009 K09338 - gmx:100806279 274.248