Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1404g00003 ATGAGCGTCTTTGCCATGATTCTTCTCACTCCCATATTTCTGTTAACCCTCGCCGCCGCGGCCGCCGCCACCTTCCTTTTCGCGGTGGTTGGGGCCGTGCTGTTCCAAACTGGGTGTGGCAAGAGGGTATGGGGAAGAATGGAAGATTGGTTCCACGTGTATCAATTCCTCACAGTACCTGAACTCAACCAAACCAAACACCACAACCACCTCTACACCAAGCTCTCCCTATACTTACATTCCCTGCCTTCCATCCAAGACTCCCACTTAGCCAACCTCGTCACTGGGAAGAACCAAAACGATGTCGTCCTCTGCCTTGCCCCCAACCAAACCATCCGGGACCATTTTCTCGGAGCCACAGTCTACTGGTTCAACCAACCCGCTCATCCCAACCCAGAAGGAACCGGAACCTACGTGCTCAAGATCAGGAAGGTGGACAAGCGCCGAATCCTCCGTCCTTATCTTCAGCACATTCACGCCGTAGCCGACGAAATCGAGCTGCAAGGGAAGCGCGACTTGCGCCTCTTCACCAACAGCGCCGATGAGTTTGGGCAGTGGAGATCCGTTCCGTTTATTCATCCTTCCACGTTCGACACCATCGCCATGGAACCGGATCTCAAAAGCAAGGTCAAATCCGACCTCGAATCCTTCCTCAGAGCGAAACAGTACTACCACCGCCTCGGCCGCGTCTGGAAACGGAGCTTCCTCCTCTATGGTCCCTCCGGCACCGGAAAATCGAGCTTCGTCGCTGCCATGGCCAATTTCCTCTCCTACGACGTGTTCGACATCGACCTGAATAAAATCCCCAGCGATTCGGATCTGAAATTGCTCCTCCTGCATACGACGCCGAAATCGGTGGTGGTGATCGAGGACCTGGACCGATTTGTGGCGGAGAAAACGGAGAGAATAAGCGTTTCGGGGATACTAAACTTCATGGACGGGCTTATAACCTCGTGTTGCGCGGAAGAGAGAGTGATGGTGTTCACGATGAACACGAAGGAGCATGTTGACCCGAACATGCTTCGTCCGGGTCGGGTCGATGTGCATATCCATTTTCCGCTTTGTGATTTTTCGGCGTTTAAAACGCTGGCGAATAGTTACCTTGGGGTGAAGGACCATAAGCTGTTCCCTCAGGTGCAAGAGATTTTCCAAAACGGTGCGAGTTTGAGTCCCGCTGAAATCGGCGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGGGCTATTAGATCAGTCATCACCGCATTGCAAACCGACGGTGATGGCAGGGGGTGCGGCTTGATCGGACGGCAAAAGGAGGAGGATGAAATGGATGAACCGGACGGGGTTGTCTGCAGTGAGGGTGTTCATACGGTTAAGGATTTGCGGAGACTGTACAGTTTTTTCAGATTCAGGGTTACGAGAAAATCTTCATCCTCCAATTCTTCCTTGACCGCTACTCCATTGCGATAA 1452 0.5296 MSVFAMILLTPIFLLTLAAAAAATFLFAVVGAVLFQTGCGKRVWGRMEDWFHVYQFLTVPELNQTKHHNHLYTKLSLYLHSLPSIQDSHLANLVTGKNQNDVVLCLAPNQTIRDHFLGATVYWFNQPAHPNPEGTGTYVLKIRKVDKRRILRPYLQHIHAVADEIELQGKRDLRLFTNSADEFGQWRSVPFIHPSTFDTIAMEPDLKSKVKSDLESFLRAKQYYHRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLSYDVFDIDLNKIPSDSDLKLLLLHTTPKSVVVIEDLDRFVAEKTERISVSGILNFMDGLITSCCAEERVMVFTMNTKEHVDPNMLRPGRVDVHIHFPLCDFSAFKTLANSYLGVKDHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIRSVITALQTDGDGRGCGLIGRQKEEDEMDEPDGVVCSEGVHTVKDLRRLYSFFRFRVTRKSSSSNSSLTATPLR 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1404g00003 483 SMART AAA_5 231 356 IPR003593 GO:0016887
Vium1404g00003 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 415 IPR027417 -
Vium1404g00003 483 Pfam ATPase family associated with various cellular activities (AAA) 236 354 IPR003959 GO:0005524|GO:0016887
Vium1404g00003 483 Pfam Domain associated at C-terminal with AAA 46 123 IPR025753 -
Vium1404g00003 483 Gene3D - 187 354 IPR027417 -
Vium1404g00003 483 PANTHER BCS1 AAA-TYPE ATPASE 49 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1404g00003 Vium-Chr1404 33333 36144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1404g00003 227 352 Calmodulin-binding Proteins AT3G56690 29.787 7.42e-07 50.1