Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14043g00005 ATGGGTTGGATTCCGTGTTCTGGAAGTTCAAACACTAAGAAGAAGCTAAAGAAGAAGTTAGAGAAGATGGAAGTGCAGAACAGTCTTGTTGATCCGATCAAAACCACCCCAGGGATGTTGAAGAGGAATTCATCCATGAATTCCAAAGATTCCACTAAAAATGGAAACCCGGATCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCTACTAGAAACTTCAGAGCTGAATGTCTTTTGGGTGAGGGAGGCTTTGGCAGAGTCTACAAGGGGCGTTTGGAAAATATTAATCAAATTGTTGCAATTAAACAACTTGACCGAAATGGACTACAAGGGAACAGAGAATTCCTTGTTGAAGTTTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGGGATCAAAGGCTTCTAGTTTATGAATTTATGTCATTAGGATCATTGGAAGACCACTTACACGATATTTCTCCTGGGAAGAAACAACTTGACTGGAACACGAGGATGAAAATAGCTGCTGGGGCTGCAAGGGGATTGGAATATTTACATGACAAAGCTAATCCTCCTGTCATATACCGTGATTTAAAATGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGTCTGGCTAAACTTGGCCCTGTGGGGGAAAACACCCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCACCAGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTTGTTCTTCTGGAAATGATTACTGGAAGGAAAGCAATTGATAATTCAAGATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCCAGACCCTTGTTCAAAGATCGAAGAAAATTCTCACAAATGGCTGATCCGATGCTCCAAGGTCAATATCCTTCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCTATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACTGCTTTGAGTTACCTTGCGTCACAAAAATATGATCCCAATACACAGACTGTACAAAGCTCTCGCCTTGCTCCTGGAACTCCTCCTAGAACCAAGAGGGGATAG 1149 0.4273 MGWIPCSGSSNTKKKLKKKLEKMEVQNSLVDPIKTTPGMLKRNSSMNSKDSTKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMSLGSLEDHLHDISPGKKQLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEMITGRKAIDNSRSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDPNTQTVQSSRLAPGTPPRTKRG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14043g00005 382 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14043g00005 382 CDD STKc_IRAK 83 351 - -
Vium14043g00005 382 Gene3D Phosphorylase Kinase; domain 1 61 153 - -
Vium14043g00005 382 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Vium14043g00005 382 SUPERFAMILY Protein kinase-like (PK-like) 58 351 IPR011009 -
Vium14043g00005 382 Coils Coil 6 26 - -
Vium14043g00005 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vium14043g00005 382 FunFam Serine/threonine-protein kinase PBS1 49 153 - -
Vium14043g00005 382 Gene3D Transferase(Phosphotransferase) domain 1 154 372 - -
Vium14043g00005 382 FunFam Serine/threonine-protein kinase PBS1 154 369 - -
Vium14043g00005 382 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14043g00005 382 MobiDBLite consensus disorder prediction 33 57 - -
Vium14043g00005 382 PANTHER OS07G0668900 PROTEIN 21 363 - -
Vium14043g00005 382 Pfam Protein kinase domain 81 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14043g00005 Vium-Chr14043 29237 32900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14043g00005 13 356 Glycoside Hydrolase AT3G07070 65.706 3.23e-167 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium14043g00005 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14043g00005 - - gmx:100499648 741.88