Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1402g00006 ATGTTCATCAAAATTGCATTTGTTTGCTTTTTTTCTACCTTGTTTCTCTTCTTCACCAATACCTCTGCCATCCACAACACATCATTCTCACCAACTTGCCTTACTCAACGCTGCACATCTGGTCCTAACATCAGCTACCCCTTTTGGCTTTCCCTTACTGACCAACTCTGCGGTTACCATGAACTTGGCCTTCTCTGTAGTGGAGGCGTCACAGTTTTTTCTCACATAGGATTATACTATACGGTACAAAATATAGACTATGAGAACCATAGCCTTAAGCTGCTGGATCCTGACACTTTCAACGAAACCTGTCCAAAGGCACGTCACGCTGTTCCCTTAGGCAACCTACCGCTTACTCACTCCCCCTTGAACTTAAACCTTAGCTTTTACTACAACTGCACTAACTACCCTTCTGGTGTGCCTTCAATCCAGTGTCTCCGTTCTGGGACAAACCAGTCTTTTGTGTTTGTGTCGGGGAACGAGACCACAGGTTTTGACTGGTCCGGGAACTGTGAGGAAAAGATTGTGGTCACAGTGATGAAGGATGCGATTACAAGTGACGGTGACTTGATAAGCCAGTTTTCGAGTGCCATGGATAAAGGGTTTGTTCTTGAATGGCACACTGCTTCGTATTGCGTTCAGTGCGAGGCTAGTGGTGGAGTCTGCGGCTACAGTAACCCCGAGAAGAAGGTGCTGTGTTTCTGCAAGGATGGAAGTACAAAAGACACTTCGTGTTACGCAGGGGGAAGCAGTTCTGGTTTGTCAAGATTAATTATAGGTTTTATTATAGCTGGAGGAATTGGTGCACTGCTGACATGCGTCGTAATTTACATTTTTGGAAGAAAATTGTCACCAATTTTGTCAGACATTCGGCAGGCGAGAAAGATTGATCGAGACATTGAGGCCTTCATCAGAAATAATGGACCACTTCCCATAAAAAGGTACTCATATTCAGATATCAAGAAAATGACCAATTATTTTGAGTCCAAACTGGGACAAGGTGGTTATGGTCAGGTATATAAGGGAAATCTATGCAACAAAGCTCCCGTGGCTGTGAAGCTACTGAATGCTTCCAAGGGAAACGGGGAAGAATTTATCAACGAGGTTATAAGCATCAGCAGAACATCCCATGTAAACATCGTTAATCTCCTTGGTTTTTGTCTTGAAGGCAAGAAGAAGGCTATTATATACGATTTTATGCAAAATGGATCACTTGAAAAGTATATTCCCAACAAGAATTTGGAAACTGATCCACCTTTGAGTTGGCAAAGGCTACACCACATTGCCGAAGGAATAGCCAAAGGATTGGAGTACTTGCACAGAGGCTGCAACACTCGGATATTGCATTTTGACATAAAACCAAGCAACATTCTTTTGGACAAAAATTTCTGTCCTAAAATCTCTGATTTTGGGATGGCCAAGCTCTGCTCAAACACACAAAGTATCATATCTATGTATGGTGCTAGAGGGACAGTTGGGTACATAGCTCCAGAGGTGTGGAACAGAAGCTTTGGAGGGGTTTCGTATAAATCTGATGTTTATAGTTACGGAATGATGATTTTGGAAATGGTTGGAGGAAGGCAAAATATCAGCATTGAAGCAAGTCATTCAAGTGAGACATATTTTCCCCATTGGATATACAAGCACGTTGAGGTGGGAAAAAATTTAGCATGGCATGAAGGTATGACCCCAGAGGAAAATGAAATTTGTAAGAAAATGATTATTGTGGGATTGTGGTGCATACAGACAATCCCTTCTGACAGGCCTGCTATGAGTCGGGTGGTTGAAATGTTAGAAGGAAGCACGGATCAATTGCAAATTCCACCCGAGCCATTCATATTTAGTCCTATGAAAACTGAAGTGGATATTTGCACCACTAGTAGCAGCGATTGA 1893 0.4258 MFIKIAFVCFFSTLFLFFTNTSAIHNTSFSPTCLTQRCTSGPNISYPFWLSLTDQLCGYHELGLLCSGGVTVFSHIGLYYTVQNIDYENHSLKLLDPDTFNETCPKARHAVPLGNLPLTHSPLNLNLSFYYNCTNYPSGVPSIQCLRSGTNQSFVFVSGNETTGFDWSGNCEEKIVVTVMKDAITSDGDLISQFSSAMDKGFVLEWHTASYCVQCEASGGVCGYSNPEKKVLCFCKDGSTKDTSCYAGGSSSGLSRLIIGFIIAGGIGALLTCVVIYIFGRKLSPILSDIRQARKIDRDIEAFIRNNGPLPIKRYSYSDIKKMTNYFESKLGQGGYGQVYKGNLCNKAPVAVKLLNASKGNGEEFINEVISISRTSHVNIVNLLGFCLEGKKKAIIYDFMQNGSLEKYIPNKNLETDPPLSWQRLHHIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGMAKLCSNTQSIISMYGARGTVGYIAPEVWNRSFGGVSYKSDVYSYGMMILEMVGGRQNISIEASHSSETYFPHWIYKHVEVGKNLAWHEGMTPEENEICKKMIIVGLWCIQTIPSDRPAMSRVVEMLEGSTDQLQIPPEPFIFSPMKTEVDICTTSSSD 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1402g00006 630 Gene3D Phosphorylase Kinase; domain 1 304 399 - -
Vium1402g00006 630 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Vium1402g00006 630 SMART serkin_6 325 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1402g00006 630 Gene3D Transferase(Phosphotransferase) domain 1 400 608 - -
Vium1402g00006 630 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Vium1402g00006 630 ProSiteProfiles Protein kinase domain profile. 325 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1402g00006 630 SUPERFAMILY Protein kinase-like (PK-like) 306 599 IPR011009 -
Vium1402g00006 630 Pfam Protein tyrosine and serine/threonine kinase 327 598 IPR001245 GO:0004672|GO:0006468
Vium1402g00006 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vium1402g00006 630 PANTHER RUST RESISTANCE KINASE LR10-RELATED 297 616 IPR045874 GO:0004672
Vium1402g00006 630 FunFam PR5-like receptor kinase 400 610 - -
Vium1402g00006 630 Pfam Wall-associated receptor kinase C-terminal 145 238 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1402g00006 Vium-Chr1402 41474 44345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1402g00006 35 613 Receptor kinase-like Gene Family AT5G38260 40.894 6.43e-142 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium1402g00006 PK_Tyr_Ser-Thr 5.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1402g00006 - - gmx:100781977 949.118