Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1402g00005 ATGGCCGCCAAACGGTTTTTGGATGATTCTGATCAAGATGCCAATGGTGATAAACGGAGGAGACCTACTTCAAGACGTTCTTTTTCTTCGGTAATAGGAGAAGTCGTCATGGTCAAGAACTTGCAGAACCTTTTCTCAGGCTTGGAACCCTTGCTTAGGAGAGTGGTGAACGAAGAGATGGAGCGAGTGATGGGGCATTGTGTGCCGCGTTCGATAACCAGGTCCCCTTCGTTGAGGATCCAAGCATTGGAGCAACCAACGAGCTACGAACTCATGTTCGAGAAGAAGCTGATGCCAACTATATTCACAGGAAGCAGAATAGTAGATACAGATGGGAACCCCCTCCTTGTTGTTCTTGTCGATAAAAGCGGTGATCAGACGGTTCGCACGAGTCTCCCCCACCCCATCAAGCTAGAAATCGTGGTGCTCGATGGAGATTTTCCTTCCACCGGTGATAACAACGAGTCGTGGACGAGTGAGGAACTCAACAACCGCATAGTGAAGGAGAGAACGGGAAAGAGGCCGCTGCTCACTGGAGAATTGAATCTGACCATGAGAGATGGAATTGCACCAATTGAAGACATTGAATTCACTGATAATTCCAGTTGGATAAGAAGCAGAAAGTTCAGAGTTGCTGTTCGAGTTGTTCCTGGGACTAATCAAACTGTTAGAATTCGTGAAGGCATGACCGAACCATTTATTGTCAGGGATCACCGTGGTGAATTGTACAAGAAACATCACCCACCTATGCTGAATGACGAAGTGTGGCGCCTAGAGAAGATCGGAAAAGACGGAGCTTTCCACAAAAAGCTGTCCAAGGAGGGAATAAACAGTGTTCAAGACTTTCTCAAGTTGTCTGTTGTTGATGCCCAGAAGCTCAGAAGGATTTTGGGCGCTGGGATGTCAGAGAGAATGTGGGATGTGACAATCAAGCATGCAAAGACATGTGAGAAGGGGAAGAAATACTATGTCTTCCGTGGGCAAAATTTTACCATCTTTCTCAATTCCATTTGCCAATTGGTTAAAGCTGACATTAATGGCCAAAGTTTTCCGGGAAGCGAGTTAAGCAACTTCACAAAGGGCTATATGGAAAAACTGGTGAGAGAAGCATATACTAGATGGAATGACTTGGAGGAAATTGATGAGGCTCTGTTAACACAAGGTGAGACCATGGAGCAAATTCCAAACAATCTTCAAGCATATGATCAGAACGAGTACTATGCATCAACACATAATGCACAGATTGGTGGCAGCGAGTGGGGTGTGAATGCAACATTTGGCACAACATCATTTGTGAATAACGCTCTTCCAGCTTTACCTTACAGCTTCTCAGATTCACAATCTGACAGTGATGGTGCCACAAGGTGGAACTAG 1374 0.4549 MAAKRFLDDSDQDANGDKRRRPTSRRSFSSVIGEVVMVKNLQNLFSGLEPLLRRVVNEEMERVMGHCVPRSITRSPSLRIQALEQPTSYELMFEKKLMPTIFTGSRIVDTDGNPLLVVLVDKSGDQTVRTSLPHPIKLEIVVLDGDFPSTGDNNESWTSEELNNRIVKERTGKRPLLTGELNLTMRDGIAPIEDIEFTDNSSWIRSRKFRVAVRVVPGTNQTVRIREGMTEPFIVRDHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLSKEGINSVQDFLKLSVVDAQKLRRILGAGMSERMWDVTIKHAKTCEKGKKYYVFRGQNFTIFLNSICQLVKADINGQSFPGSELSNFTKGYMEKLVREAYTRWNDLEEIDEALLTQGETMEQIPNNLQAYDQNEYYASTHNAQIGGSEWGVNATFGTTSFVNNALPALPYSFSDSQSDSDGATRWN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1402g00005 457 Pfam Calmodulin binding protein central domain 250 316 IPR046830 -
Vium1402g00005 457 MobiDBLite consensus disorder prediction 1 25 - -
Vium1402g00005 457 Pfam Calmodulin binding protein-like N-terminal domain 89 238 IPR046831 -
Vium1402g00005 457 Pfam Calmodulin binding protein C-terminal domain 321 380 IPR046829 -
Vium1402g00005 457 PANTHER OS02G0177800 PROTEIN 1 448 IPR012416 GO:0005516
Vium1402g00005 457 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1402g00005 Vium-Chr1402 33783 37589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1402g00005 3 401 Calmodulin-binding Proteins AT5G57580 46.192 3.79e-115 350