Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1402g00001 ATGGCAACGCCGTTGGACGGAGGAGGAGTGGCGGTGCTCTCGAGTTCCGTCAACAAGGTAGACTCCGCCTCGGCTCTCAAGGACGACTTGAAGTGCTCGAAAACGGAGTCGCCGATTTTGATTTTCTTGTTTTTTCACAAAGCAATTCGGAATGAGCTTGAGGCGCTTCACAGATTGGCCTTGGCATTCGCCACCGGCAACCGCTCCGACATTAAACCGCTCTCCGAGCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTCCAATGCTGAAGACGAGGTGATATTTCCAGATTTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTCGAACACAAGGGTGAAAACAACCTTTTTGATCATCTATTTGAGCTTTTAAATTCTTCCATCAATAGTGATGAAACTTTTCCAAGAGAGTTAGCTTCCTGCACAGGAGCTTTACAGACGTCAGTTAGTCAACATATGGCAAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATCGAGAAGTTTTCTCTGGAGGAACAGGCATCCTTAGTTTGGCAGTTCCTGTGCAGTATTCCTGTGAATATGATGGTCGATTTTCTACCGTGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCACAGGAGAAGCTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGAGAGATAGGGCTAACTCAGTTGAAAGTTGTGTAGATCATTCTCAAGTTTTATGCAGTTCTAGGTCATTACCCAATCAGGTTGAGAAAGTAAACTGTGCCTGTGAATCTACAACATGTGGAAAAAGGAAATATTCTGGATCTATGATAGACGTTTCTGATACAACTGGAGCACATCCTATAGATGAAATATTACTTTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGGCCAGAAAGATACAACACTCTGGAGATTTTACAAATCTGTCTGCTTTTAATGAAAGATTTCAATTCATAGCCGATGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCGGCGGTCGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGAAGTTTGATTGAAAATATTCAAAGTGAAGGAGCATCATCCAATTCAGATGTTGAATTTTACTCCAAGTTATGCACACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCACAATGAAGAAGTTCAGGTTCTTCCTCTGGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTTTGTATCAAAGCTTATGTATGATGCCTTTGAAATTAATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTTACTGAAGATGAAGCAAAGATGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTAGTTACACTCTTCTGTGGATGGGGTTGCAAGGCTCGTAGTGGAGGTCAGTGTTTGTCTTCAGGTGCATCAGGTTGCTGTCCTGCACATAAACTTTCTGACATTGAAGAATACATTGATCCAATATCCTGTGCTTGTTCATCTACATTATCTAATAGACATTGCTCAGTATTAACAGAATCAGGAGAGAACAAAAGAGAAGTCAAACGAAACATATTGAAGTTGCACAAAAATGAAGATTTGCCAGAAACTTCGGAGACTGAAAGCATTGAGAAACAATGTTGTAGTCCACGGTCTTGTTGTGTGCCAGGTTTGGGAGTAAATAGTAACAATTTAGGGTTGAGCTCTCTCTCTACAGCCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTTTGCCCCATCTATTAATTCCAGTCTGTTCGTATGGGAAACAGAGAGAGGGTCTTGCAATGTGGGATGGACACAAAGACCAATTGATACAATCTTTAAATTCCATAAAGCCATACGCAAAGACTTGGAGTATCTTGATGTTGAATCAGGAAAGCTGCGAGATGGTGATGAGACAATTATTCGGCAATTTAATGGAAGATTTCGACTCTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTGGAATCCAAAGAGGCGCTTCATAATGTGAGTCATTCATACATGCTAGACCATAAGCAGGAAGAAAAATTGTTTGAAGACATTTCCTGTGTTCTTTCAGAGTTTTCTGTCATTCATGAATCCTTGCAGATGACCCACATGGCTGAGAGTTTAAGTGAAAGTAATTTTGAAACCTCTGATGGCAATAATACTAGTGATGTCATAAAAAAATATAATGAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTTGATCAGCATCTCTTCAGAGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTTACTGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGAACGACGGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACATCTGCCCTTACTCAGGATGAACAGAACAGAATGATGGATACATGGAAACAAGCAACAAAGAACACTATGTTCAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGTGTCTATAGCACAGGAAGAAGCATCAGATCATAGCACTTCTCCGAGAGGTGCTGAAGGTCGAGAAAGCTTGGGCCACAATGATCCGATGTTCAAGCCAGGTTGGAAAGACATATTTCGAATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTATATCGAGACTCAACACTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTATTGACAAGTCGATGGATAGCTGCCCAGCAGCAATCACCTAAAGCACTTTCGGAAGGATCATCTAACAGTGTAGAAATAGTAGGACTCTCACCATCATTTCGAGACCCAGAGAAACTTGTATTTGGGTGTGATCACTATAAGAGAAATTGCAAGCTTCGGGCTGAATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGTGATCACACGATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCGCTGCCTGAATATACAGCCTATCGGGCCTATGTGCATGACACCTTCATGTAATGGATTTTCGATGGCGAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGTATCTTTTTGTTCGTTGGAATCCTAAATATGGTATTAAAACTGCTATTACCTTCCTTTTCCCGTGTGGTGGTGGGTGGGGTAGGTGTTACCGATTTGTTGGAGACAATAATTCTGTAAACTAA 3339 0.4106 MATPLDGGGVAVLSSSVNKVDSASALKDDLKCSKTESPILIFLFFHKAIRNELEALHRLALAFATGNRSDIKPLSERYHFLSSMYRHHSNAEDEVIFPDLDIRVKNVAQTYSLEHKGENNLFDHLFELLNSSINSDETFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMVDFLPWLSTSISPDESQDLRNCLIKIVPQEKLLQKVVFTWMEGRDRANSVESCVDHSQVLCSSRSLPNQVEKVNCACESTTCGKRKYSGSMIDVSDTTGAHPIDEILLWHNAIKKELSEIAVEARKIQHSGDFTNLSAFNERFQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRSLIENIQSEGASSNSDVEFYSKLCTHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSFTEDEAKMFQRNMQLAAPATDSALVTLFCGWGCKARSGGQCLSSGASGCCPAHKLSDIEEYIDPISCACSSTLSNRHCSVLTESGENKREVKRNILKLHKNEDLPETSETESIEKQCCSPRSCCVPGLGVNSNNLGLSSLSTAKSLRSLSFSSFAPSINSSLFVWETERGSCNVGWTQRPIDTIFKFHKAIRKDLEYLDVESGKLRDGDETIIRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSEFSVIHESLQMTHMAESLSESNFETSDGNNTSDVIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNRMMDTWKQATKNTMFNEWLSECWKESPVSIAQEEASDHSTSPRGAEGRESLGHNDPMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQQSPKALSEGSSNSVEIVGLSPSFRDPEKLVFGCDHYKRNCKLRAECCGKLFTCRFCHDNVSDHTMDRKATLEMMCMRCLNIQPIGPMCMTPSCNGFSMAKYYCNICKFFDDERYLFVRWNPKYGIKTAITFLFPCGGGWGRCYRFVGDNNSVN 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1402g00001 1112 MobiDBLite consensus disorder prediction 890 904 - -
Vium1402g00001 1112 CDD Hr-like 41 167 - -
Vium1402g00001 1112 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 687 1071 - -
Vium1402g00001 1112 Pfam Hemerythrin HHE cation binding domain 295 429 IPR012312 -
Vium1402g00001 1112 Pfam Hemerythrin HHE cation binding domain 644 807 IPR012312 -
Vium1402g00001 1112 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Vium1402g00001 1112 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Vium1402g00001 1112 MobiDBLite consensus disorder prediction 881 905 - -
Vium1402g00001 1112 Gene3D nmb1532 protein domain like 641 881 - -
Vium1402g00001 1112 SUPERFAMILY CHY zinc finger-like 987 1048 IPR037274 GO:0008270
Vium1402g00001 1112 CDD Hr-like 298 427 - -
Vium1402g00001 1112 CDD Hr-like 646 807 - -
Vium1402g00001 1112 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Vium1402g00001 1112 Gene3D nmb1532 protein domain like 35 187 - -
Vium1402g00001 1112 Gene3D nmb1532 protein domain like 297 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1402g00001 Vium-Chr1402 547 10616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1402g00001 1 1075 C2H2 Transcription Factor Family AT3G18290 63.091 0.0 1379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1402g00001 K16276 - gmx:100801725 1922.52