Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1400g00006 ATGGGTGGCAATGGGAAGCACAGATGGAAAATCTCCTTCCACCGCTCCTCTTCCCAATCCTCCAAGCTCGACCCCAAGCTCCCTCCCAAGGAATTTACGTGCCCCATTTCCGGTTCCTTAATGTTCGACCCGGTTGTCGTCGCTTCGGGTCAAACCTTTGAACGTCTCGCCGTTCAAGTCTGTAAGGACCTCAACTTCTCCCCCAAACAAGAAGACGGCACCCGGCCCGATTTCTCAACGGTAATCCCTAACTTAGCCCTCAAAACCACAATCCTCAATTGGTGCGATAAATCACGCAGCCAACACCCGCGCGCACCCGATTACGCCTCCCTCGGGGGCCGCGTCAGGCAGGCAATGCTTCTTTCGGTGGGACAAAATCAACAGGAAGAACGACAAGAACGAATTAGGGTTTCCGAAACGGAGCTTCTCAACGCGGTCCCGGATAACCCTCCCGTCATTTTCTCCCACGCCGCCACTGAGTTAAGCCCCCGAGTCAACCACTTCAACTCGGGATCCTCCTCCGAGGAGTCGGTCATCATTCTGCCCAGTCCGGGAACGCCGTTACCGTTTACTGTTCGTCCAACCTGCTTCTCCTCCTCCTCCTCCTGCGAGATTGAAATTGAAAACCCTAGCGCGCCGGTTTCGGAGGAAGAGGAAAGAATATTGAAGAAATTGAAGAGCAGCGAGGTGTTTGAGAAAGAGGAAGGCGTAATCGCGCTGAGGAAGATCACGAGGAGCAAAGTGGAGGCTAGGCTCTTGCTCTGCACGCCGCGGGTGCTGCTGGCGCTGCGCGGTTTGATCGCTTCGCGATACGGCGTTGTTCAGGTCAACGCAGTGGCGTCTCTGGTCAACCTCTCGCTGGAGAAGCAGAACAAGGTGAAGATAGTGAGGTCGGGGTTTGTACCGTTTTTAATCGATGTTTTGAAGGGGGGATTGGATGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTCAGTTTAGCCTTGGATGATGATAATAAAATGGCCATTGGCGTTCTCGGCGCGTTGCAGCCGCTGATACACTCGCTGCGTGCCGAGTCCGATAGGACTCGGCATGACTCGGCGCTCGCGTTGTATCATCTGAGCCTGGTTCAGAGTAACCGAGTGAAGCTGGTGAAACTCGGGGTGGTACCGACGCTTTTGTCCATGGTGGTGGCGGGGAATTTGGCGAGCCAAGTGCTGCTGATTCTTTGCAACCTGGCGATGTGCACGGAGGGGCGCACGGCTATGCTGGACGCGAACGCGGTGGAGTGTCTGGTGGGGCTGTTGAGGACGAACGAGTTGGACTCAGAGGCGATTCGGGAGAATTGCGTGGCAGCGCTGTTTGCGCTGAGTCATAGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGACGCGAGGGTTGTGGAGGTTTTGAAGGAGGTTGAAAAAACGGGAACAGAGAGGGCCAGGGAGAAGGCCAGGAAGGTGTTGCACATGTTGAGAACTGTGGGCGATGGAGGTGATGATGAAGGTGACGAATTTTACGACACGGTCGGGTTGACGCGGAATCGTTACCGACTTGGTGCTGGCAGGAACCACAACATCCTCAACACGACCACGTTTTAG 1602 0.5549 MGGNGKHRWKISFHRSSSQSSKLDPKLPPKEFTCPISGSLMFDPVVVASGQTFERLAVQVCKDLNFSPKQEDGTRPDFSTVIPNLALKTTILNWCDKSRSQHPRAPDYASLGGRVRQAMLLSVGQNQQEERQERIRVSETELLNAVPDNPPVIFSHAATELSPRVNHFNSGSSSEESVIILPSPGTPLPFTVRPTCFSSSSSCEIEIENPSAPVSEEEERILKKLKSSEVFEKEEGVIALRKITRSKVEARLLLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLDESQEHAAGALFSLALDDDNKMAIGVLGALQPLIHSLRAESDRTRHDSALALYHLSLVQSNRVKLVKLGVVPTLLSMVVAGNLASQVLLILCNLAMCTEGRTAMLDANAVECLVGLLRTNELDSEAIRENCVAALFALSHRSLRFKGLAKDARVVEVLKEVEKTGTERAREKARKVLHMLRTVGDGGDDEGDEFYDTVGLTRNRYRLGAGRNHNILNTTTF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1400g00006 533 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Vium1400g00006 533 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Vium1400g00006 533 Pfam U-box domain 29 98 IPR003613 GO:0004842|GO:0016567
Vium1400g00006 533 Gene3D - 215 498 IPR011989 -
Vium1400g00006 533 FunFam RING-type E3 ubiquitin transferase 216 492 - -
Vium1400g00006 533 SMART arm_5 409 452 IPR000225 GO:0005515
Vium1400g00006 533 SMART arm_5 288 328 IPR000225 GO:0005515
Vium1400g00006 533 SMART arm_5 329 369 IPR000225 GO:0005515
Vium1400g00006 533 MobiDBLite consensus disorder prediction 1 28 - -
Vium1400g00006 533 FunFam RING-type E3 ubiquitin transferase 9 102 - -
Vium1400g00006 533 SUPERFAMILY RING/U-box 14 102 - -
Vium1400g00006 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 101 IPR013083 -
Vium1400g00006 533 PANTHER U BOX DOMAIN-CONTAINING 21 492 - -
Vium1400g00006 533 SUPERFAMILY ARM repeat 220 492 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1400g00006 Vium-Chr1400 119873 123274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1400g00006 1 532 U-box Gene Family AT5G65200 55.674 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1400g00006 - - gmx:100784564 853.203