Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1399g00013 ATGAATGGAAGACAAGGACGAGCAACCTCCGATCCCGCCGCGGTTGAGTTTGCCGGCGACACGAGTTGGACATTCGCCGCAGATGGCTCAGACGCTGCCTACTTGTTCTCGCCGATGGAGAGCGAAGCGTACTCAGGGAACGGGTGGAACCTCGAACTGGACCAGTTGAACCGGATCGGCACCGACGATGGATTGTGGATGCCGGTTCAATCCTCTCTGACCTGTTCGATTGAACCGGCCGCTGCTGCATCGTCGCGGTCGAATAACCAGTCGGTGTCGTCGAGCTCCAGTGAGGACCAGCCGGAGAAATCCACCGTCTCTGATGAGAAACCGCCTGAGATACCGATTAAAGGTAAAAAGAAGGGGCAAAAGCGAATACGGCTGCCACGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGCCCATTCCCTAGGAGCTACTACCGCTGCACAAACAGCAAATGCACGGTGAAGAAGAGGGTTGAACGCTCTTCCGAGGACCCAACGATTGTGATTACCACATATGAAGGTCAACACTGTCATCACACCGTTGGATTTCCTCGAGGGGGAATCATTTGTCACGAGGCTGCTGCCTTTGCGGGCCAGTTGGCTCCTATGTCACAGTTTTATTATCCAATTCATTCACCCAGAGAGACTAATAATATAAATACTCTCAGCTCCATTTCTCCGCCATGCCAAGCACAGGATGATGCATCTGGGGGATCCAACACTGTAATGCCAGCTGATGCGTCGTCACTGCAGCCTCCCACTGATGAAGGGTTGCTTGGAGATATTGTACCTCCGGGAATGCGTATCAGATGA 876 0.5205 MNGRQGRATSDPAAVEFAGDTSWTFAADGSDAAYLFSPMESEAYSGNXGWNLELDQLNRIGTDDGLWMPVQSSLTCSIEPAAAASSRSNNQSVSSSSSEDQPEKSTVSDEKPPEIPIKGKKKGQKRIRLPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGIICHEAAAFAGQLAPMSQFYYPIHSPRETNNINTLSSISPPCQAQDDASGGSNTVMPADASSLQPPTDEGLLGDIVPPGMRIR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1399g00013 292 MobiDBLite consensus disorder prediction 81 102 - -
Vium1399g00013 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 233 IPR044810 GO:0003700
Vium1399g00013 292 FunFam WRKY transcription factor 57 129 203 - -
Vium1399g00013 292 MobiDBLite consensus disorder prediction 241 270 - -
Vium1399g00013 292 MobiDBLite consensus disorder prediction 81 122 - -
Vium1399g00013 292 SMART WRKY_cls 143 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1399g00013 292 ProSiteProfiles WRKY domain profile. 138 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1399g00013 292 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1399g00013 292 Gene3D WRKY domain 130 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1399g00013 292 SUPERFAMILY WRKY DNA-binding domain 135 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1399g00013 292 MobiDBLite consensus disorder prediction 241 287 - -
Vium1399g00013 292 MobiDBLite consensus disorder prediction 103 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1399g00013 Vium-Chr1399 118355 125205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1399g00013 88 290 WRKY Transcription Factor Family AT1G69310 57.547 1.32e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1399g00013 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1399g00013 - - gmx:100170676 413.305