Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1399g00010 ATGGATCCTTCCTTTACTTCAAAATCCCTTCTGCATGTTTTTCTTATCTTAGGCTTTCTTGGTACCACCAGATTGCATGCAAGTGACACTCCTCTGACACTGGATTACTATGCATCAACTTGCCCCACTGTGTTTGATATTGTCAGTAAGGAAATGGAATGTGCAGTTCTTTCTGATCCCCGCAATGCAGCAAAGATAGTCCGGCTACATTTCCATGACTGCTTTGTTCAGGGATGCGATGGATCCATTTTGCTTGATGATACAGTCACACTTAAAGGTGAGAAAAAGGCAGCTAACAACATCAACTCTTTGAAAGGCTCGGCAATCGTTGATAGAATAAAAAACATGGTTGAATCAGAGTGCCCTGGAGTTGTTTCTTGCGCTGATATTCTCACAATTGCAGCCAGAGATGCTGTGATTCTGGTAGGGGGGCCATACTGGGATGTTCCTGTGGGAAGGAAGGATTCTGTCACTGCAAATTTTGAACTTGCCAACACCAATCTTCCCACTCCAGAGGAGAGCCTTCTCTCTATCATTGCCAAGTTTCTTTACCAAGGTCTATCTGTGACTGATATGGTAGCCCTTGCAGGAGCCCACACCATTGGCATGGCACAGTGTAAGAATTTCAGGTCAAGAATTTATGGAGGCTTTGACTCAGTATCATTGAAAAATCCAATTTCTGAGAGTCACCGCAGCAACCTGAGATCTGTTTGTCCACCTGTTGGGGGAGGAGACAACAACATAACTGCAATGGACTATATGACACCTAATCTGTTTGATAATTCTTTCTACCAGTTACTGCTAAATGGGGAGGGAGTTCTCAACTCAGACCAAGAAATGTACTCAAGTTTGTTTGGTATTGAAACTAGAGAGCTTGTGAAGAAGTATGCAGCAGATCCTCTGGCTTTCTTCCAACAGTTCTCAGAGTCAATGGTGAAAATGGGAAATATAACAAACTCGGAAAGCTTCATCACTGGGGAAGTTAGGAAGAACTGCAGATTTGTCAACACATAG 1014 0.432 MDPSFTSKSLLHVFLILGFLGTTRLHASDTPLTLDYYASTCPTVFDIVSKEMECAVLSDPRNAAKIVRLHFHDCFVQGCDGSILLDDTVTLKGEKKAANNINSLKGSAIVDRIKNMVESECPGVVSCADILTIAARDAVILVGGPYWDVPVGRKDSVTANFELANTNLPTPEESLLSIIAKFLYQGLSVTDMVALAGAHTIGMAQCKNFRSRIYGGFDSVSLKNPISESHRSNLRSVCPPVGGGDNNITAMDYMTPNLFDNSFYQLLLNGEGVLNSDQEMYSSLFGIETRELVKKYAADPLAFFQQFSESMVKMGNITNSESFITGEVRKNCRFVNT 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1399g00010 337 Pfam Peroxidase 49 299 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Plant peroxidase signature 266 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 SUPERFAMILY Heme-dependent peroxidases 32 336 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 Gene3D - 36 336 - -
Vium1399g00010 337 PANTHER PEROXIDASE 72-RELATED 31 335 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 Gene3D Peroxidase, domain 2 169 314 - -
Vium1399g00010 337 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Vium1399g00010 337 ProSiteProfiles Plant heme peroxidase family profile. 31 336 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1399g00010 337 CDD secretory_peroxidase 32 335 IPR033905 GO:0004601|GO:0042744
Vium1399g00010 337 FunFam Peroxidase 169 314 - -
Vium1399g00010 337 FunFam Peroxidase 35 178 - -
Vium1399g00010 337 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1399g00010 Vium-Chr1399 99402 102139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1399g00010 27 337 Peroxidase AT1G68850 74.679 5.74e-179 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1399g00010 K00430 - gmx:100780750 608.216