Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1399g00009 ATGTCGTATCAATCAATGGAGGAGAGAAAGTTTGTTTGCAAGTATTGCAGCAAGAGGTTCCCGTGTGGGAAGTCTCTCGGTGGCCACATCAGAACTCACATGATGAGTGAGAATTCAGCTTTAGGTAATGCAGAGAGGAGCAATGCTACTAATGGTATGTTCAAGTTGAATGGCCGGGGAAAGAGGAAGAGAGATTTGGGGTCTGAAGAAAACGGTGGTGGTGGCGGTGGTGGGGCTACTTATGGTCTTAGAGAGAACCCCAAGAAGACCACGAGGTTTGTACATTCCAATTCCAGTTTGCAGCTTGAAAAGTTCTGCAAAGAATGTGGGAAGGGATTTCTGTCATTGAAGGCTCTTTGTGGCCACATGGCTTGCCACTCTGAAAAGGACAAGGGAGGCAATAGGTTTGAGAGCAGTTCTAGTGGGTTTGCTGAGAAGCAGAAATTGGCTATGGACAGTCAATCTGACACCGAAACTTCTACGCCAAGGAGGTCCAAGAGAAAGAGGTTCAAGACCCTTAGCAATAGCAACAACCAAGCTCAATCTTCTGTTTCGGAGGTTGAGCAGGGTCAGGAAGAGGTGGCTAGGTGTTTGATGATGTTGTCCAAGGATTCTAGCTATAAGGGTCGTTTTTCTTTGTTCACAGAGTCTTCTGATAACAACTCGGTTGTTCTAGAGGTTAAGTCACCTTCACCGGACACTAAGGTTACTATGATGAATAGTGATGGTAAGAACTTTGTGTCTGGTGCTTATGAGGAGAAGAAGTTGGAGCAGTCCAAGGAGTTTAAGTATGCTGAAGTTGGCTATGATTCTGATAATTCAGATTCTGGGTATTTTAGATATGGTCCTAAGGAGGTTGACTCCACTGATTCAAATAATGGGAATTTCAAGAATGAGGTTCAGTCTTCGAAAGTGGGGTGCTTTTCTGGGTTTGAGGATTATGATGTTGAGTCAAGGAAAGTGCCAAGCAGGAGCGTTGAATTCAAGAAATTTGTTGTGGAGAATTGGGAGAATGATAGACAAGATGGTGGAGCTGCAAGGAAATTTGATTCAAAGAAAAGTAAGAAACCCAACTATGAGTCTCTTGGGCAGAATTTAGTAAGGGTTTCTAGCAGGAAGATGGGGAATGGTTCTGGCAATGATAAGGTGAACAAGTACGAGTGCTTAACCAGTGAAAGAGACAATGGTTATGATGATTCTGCTTATGAGAGTGATGAAAACAGCACAGACAGTGATTCTTATCCAGCTCCGAAGGCTTACAGCAAGAGGAACCTCAGTGGCCAAAAGGGGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGCACATGAATGCCCAATCTGCAACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCATAAGAGATCCCATTTTATTGGAGGTTCTGAAGAGAACACCCTAGTGATAAGACCAGGAGCTGCTGCTGTTCCTTGCCTCATTGATCTCAACTTACCAGCACCAGTTGATGAATAG 1494 0.4411 MSYQSMEERKFVCKYCSKRFPCGKSLGGHIRTHMMSENSALGNAERSNATNGMFKLNGRGKRKRDLGSEENGGGGGGGATYGLRENPKKTTRFVHSNSSLQLEKFCKECGKGFLSLKALCGHMACHSEKDKGGNRFESSSSGFAEKQKLAMDSQSDTETSTPRRSKRKRFKTLSNSNNQAQSSVSEVEQGQEEVARCLMMLSKDSSYKGRFSLFTESSDNNSVVLEVKSPSPDTKVTMMNSDGKNFVSGAYEEKKLEQSKEFKYAEVGYDSDNSDSGYFRYGPKEVDSTDSNNGNFKNEVQSSKVGCFSGFEDYDVESRKVPSRSVEFKKFVVENWENDRQDGGAARKFDSKKSKKPNYESLGQNLVRVSSRKMGNGSGNDKVNKYECLTSERDNGYDDSAYESDENSTDSDSYPAPKAYSKRNLSGQKGKKKLKSKKSKAHECPICNKIFRSGQALGGHKRSHFIGGSEENTLVIRPGAAAVPCLIDLNLPAPVDE 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1399g00009 497 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Vium1399g00009 497 SUPERFAMILY beta-beta-alpha zinc fingers 7 35 IPR036236 -
Vium1399g00009 497 SMART c2h2final6 104 126 IPR013087 -
Vium1399g00009 497 SMART c2h2final6 11 33 IPR013087 -
Vium1399g00009 497 SMART c2h2final6 442 464 IPR013087 -
Vium1399g00009 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 442 464 IPR013087 -
Vium1399g00009 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
Vium1399g00009 497 MobiDBLite consensus disorder prediction 172 187 - -
Vium1399g00009 497 ProSitePatterns Zinc finger C2H2 type domain signature. 444 464 IPR013087 -
Vium1399g00009 497 MobiDBLite consensus disorder prediction 358 378 - -
Vium1399g00009 497 MobiDBLite consensus disorder prediction 342 357 - -
Vium1399g00009 497 MobiDBLite consensus disorder prediction 342 438 - -
Vium1399g00009 497 MobiDBLite consensus disorder prediction 50 86 - -
Vium1399g00009 497 Pfam C2H2-type zinc finger 106 128 - -
Vium1399g00009 497 Pfam C2H2-type zinc finger 441 464 - -
Vium1399g00009 497 Pfam C2H2-type zinc finger 11 34 - -
Vium1399g00009 497 SUPERFAMILY beta-beta-alpha zinc fingers 105 464 IPR036236 -
Vium1399g00009 497 Gene3D Classic Zinc Finger 2 131 - -
Vium1399g00009 497 MobiDBLite consensus disorder prediction 136 158 - -
Vium1399g00009 497 MobiDBLite consensus disorder prediction 128 187 - -
Vium1399g00009 497 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 6 497 - -
Vium1399g00009 497 MobiDBLite consensus disorder prediction 386 400 - -
Vium1399g00009 497 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Vium1399g00009 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1399g00009 Vium-Chr1399 89596 91901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1399g00009 4 497 C2H2 Transcription Factor Family AT1G26610 41.121 3.92e-97 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1399g00009 zf-C2H2_6 1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1399g00009 - - gmx:100805520 629.402