Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13990g00001 ATGAACTTTGTTCCTACTCTTCGGTCTGGTGAGTGGAGTGATATTGGAGAACGCCCTTCCATGGAGGATACACACATATGCATTGGAGATTTGGCCAGAAAATTTGGCAATAACGAACTTTCTGAGGAAGCTATTTCCTTTTATGGTGTATTTGATGGACACGGAGGGAAGAGTGCTGCACAATTTGTTCGTGATCATCTACCACAGGTGATTGTTGAGGATGCTGACTTTCCTTTGGAACTTGAGAAGGTTGTAACAAGGTCATTTTTGGAGACTGATGCAGAGTTTGCAAGATCGTGTTCTATTGAGTCTTCCCTATCTTCTGGCACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGACTGTCGTGCTGTGTTATCCCGTGGCGGCCGAGCTGTAGAAATGTCCAAAGATCACAGACCATTGTGCATGAAAGAAAGGATGAGGATTGAGTCAGTAGGTGGATATATAGATGATGGTTACCTGAATGGTCAGTTAGGTGTGACTCGTGCTCTAGGGGACTGGCATCTTGAAGGAATGAAGGAGATGAATGGAAAACATGGACCATTGAGTGCTGAGCCTGAA 609 0.4433 MNFVPTLRSGEWSDIGERPSMEDTHICIGDLARKFGNNELSEEAISFYGVFDGHGGKSAAQFVRDHLPQVIVEDADFPLELEKVVTRSFLETDAEFARSCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGRAVEMSKDHRPLCMKERMRIESVGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKHGPLSAEPE 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13990g00001 203 Gene3D - 4 203 IPR036457 -
Vium13990g00001 203 PANTHER PROTEIN PHOSPHATASE 2C 9 203 IPR015655 GO:0004722|GO:0006470
Vium13990g00001 203 Pfam Protein phosphatase 2C 18 203 IPR001932 -
Vium13990g00001 203 ProSiteProfiles PPM-type phosphatase domain profile. 8 203 IPR001932 -
Vium13990g00001 203 SUPERFAMILY PP2C-like 4 203 IPR036457 -
Vium13990g00001 203 ProSitePatterns PPM-type phosphatase domain signature. 47 55 IPR000222 GO:0043169
Vium13990g00001 203 SMART PP2C_4 1 202 IPR001932 -
Vium13990g00001 203 CDD PP2Cc 8 203 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13990g00001 Vium-Chr13990 6 1739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13990g00001 3 203 PP2C-type Phosphatase Gene Family AT2G25620 60.488 9.93e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vium13990g00001 PP2C 1.9e-44 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13990g00001 K14803 - gmx:100782648 379.793