Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1398g00031 ATGGGTGATGCAATTGATTTGACCGGGGATGGAGGAGTCATTAAGACCATTTTGAGAAAAAGCAAAACCGATGCTGTTGGTCCTACAGAAAATTTTCCTCTTGTTGATGTTCACTATGAAGGCACACTTGCTGATACCGGTGAAGTTTTTGACACAACACACGAAGATAACACTATCTTCTCTTTTGAGCTTGGGAAGGGCAGTGTTATCAAGGCTTGGGAGATTGCAGTCAAAACCATGAAGGTCGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGTGCGGGATCTCCTCCAGATATTCCTCCAGAAGCAACACTTGTTTTTGAAGTTGAGTTAGTTGCCTGTCGGCCAAGGAAGGGTTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCAAGGCTTGAAGAACTGAAGAAGCAGAGAGAGCTAGCTGCTGCTGTCAAAGAAGAAGAGAAGAAGAAGAGAGAAGAAGCAAAAGCAGCTGCTGCTGCACGTCTGCAAGCAAAGTTAGAAGCCAAAAAAGGTCAAGGAAAGGGTAAAGGTAAAGCAAAGTAG 567 0.4444 MGDAIDLTGDGGVIKTILRKSKTDAVGPTENFPLVDVHYEGTLADTGEVFDTTHEDNTIFSFELGKGSVIKAWEIAVKTMKVGEVAKITCKPEYAYGSAGSPPDIPPEATLVFEVELVACRPRKGSSLGSVSEERARLEELKKQRELAAAVKEEEKKKREEAKAAAAARLQAKLEAKKGQGKGKGKAK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1398g00031 188 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 32 121 IPR001179 GO:0003755
Vium1398g00031 188 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 10 181 - -
Vium1398g00031 188 Coils Coil 131 177 - -
Vium1398g00031 188 Gene3D - 2 120 IPR046357 GO:0003755
Vium1398g00031 188 SUPERFAMILY FKBP-like 8 124 - -
Vium1398g00031 188 FunFam Peptidylprolyl isomerase 1 120 - -
Vium1398g00031 188 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 34 118 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1398g00031 Vium-Chr1398 198811 205440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1398g00031 4 173 Calmodulin-binding Proteins AT5G48570 33.005 3.56e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1398g00031 K01802 - gmx:100500018 290.812